Browse Element(s) Details


Os.15831.4.S1_x_at

Description gb:NM_189025.1
DB_XREF= gi:34905133
GEN=P0686C03.50
TID=Os.15831.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15831 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative C2H2 zinc-finger protein (P0686C03.50), mRNA.
PROD=putative C2H2 zinc-finger protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4056011/11C2H2 zinc-finger protein, putative, expressed
LOC_Os08g405401/11C2H2 zinc-finger protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40530Os.10351.2.S1_at11/118+25519242..25526882Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os08g40530Os.10351.1.S1_a_at11/118+25519242..25526882Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os08g40540OsAffx.6095.1.S1_s_at11/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40540OsAffx.6095.1.S1_at9/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40540Os.15831.4.S1_x_at1/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40550Os.45957.4.S1_x_at11/118+25535896..25540697retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40560Os.15831.4.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560OsAffx.6874.1.S1_at1/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40570Os.27275.1.S1_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os08g40570Os.27275.2.S1_x_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os08g40580Os.6650.1.S1_at11/118+25554795..25557771spermine/spermidine synthase, putative, expressed
LOC_Os08g40590Os.6381.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40590OsAffx.471.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40600OsAffx.21993.1.S1_at11/118+25567304..25568780Thaumatin family protein
LOC_Os08g40600OsAffx.21993.2.S1_x_at3/118+25567304..25568780Thaumatin family protein
LOC_Os08g40610Os.6512.1.S1_at11/118+25569799..25571502ribosomal protein S16 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016568biological_processchromatin modification
GO:0045449biological_processregulation of transcription
GO:0048367biological_processshoot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15831.4.S1_x_at--1142--691Chr08:25546129..25546150 (22 bp)
ATGAGTGATCCCAAGGCACCTGGTG
LOC_Os08g40560
Os.15831.4.S1_x_at--1158--7651Chr08:25546105..25546129 (25 bp)
GGGATGCCTATCATGCAGCAACCTG
LOC_Os08g40560
Os.15831.4.S1_x_at--546--1411Chr08:25545982..25546006 (25 bp)
AGAAAGTCAGACAGCGGCCACCAAT
LOC_Os08g40560
Os.15831.4.S1_x_at--330--6252Chr08:25545893..25545917 (25 bp)
GATGGATCCAGTGACAACCCTGATG
LOC_Os08g40560
Os.15831.4.S1_x_at--315--8611Chr08:25545852..25545876 (25 bp)
TGGTGATCCGGTTATGCATGGCGCC
LOC_Os08g40560
Os.15831.4.S1_x_at--299--231Chr08:25545817..25545841 (25 bp)
ATATTCCTGCTCCTCCAGTGTTGAT
LOC_Os08g40560
Os.15831.4.S1_x_at--640--2031Chr08:25545699..25545723 (25 bp)
ACTAGGACCATTTATTCCTGCACCA
LOC_Os08g40560
Os.15831.4.S1_x_at--750--3371Chr08:25545679..25545703 (25 bp)
CACCACCTGAAGTTGCTATGCGTAT
LOC_Os08g40560
Os.15831.4.S1_x_at--537--10391Chr08:25545627..25545651 (25 bp)
TTTTGAGCCAACTGGTGGTCCACGT
LOC_Os08g40560
Os.15831.4.S1_x_at--528--7731Chr08:25545584..25545608 (25 bp)
GGTGGTCTTCCAATGGGTGGCCCAT
LOC_Os08g40560
Os.15831.4.S1_x_at--327--2771Chr08:25544522..25544546 (25 bp)
AAGACCTTGATGCTCCTGAAGATGA
LOC_Os08g40560
Target Sequence 
ATGAGTGATCCCAAGGCACCTGGTGGGATGCCTATCATGCAGCAACCTGCTCCAAGGGAGAAAGTCAGACAGCGGCCACC
AATAGAGAGTCGGCTGAGAGATGAGCGTGGCAATCGTAGGTTTGATAGAAATGATTCACCAACCCATGATGGATCCAGTG
ACAACCCTGATGATGCATATGATTCTTATGGTGATCCGGTTATGCATGGCGCCTTTCCTCCGGATATTCCTGCTCCTCCA
GTGTTGATGCCTGTGCCTGGTGCTGGCCCACTAGGACCATTTATTCCTGCACCACCTGAAGTTGCTATGCGTATGATGAG
AGATCAGGGTGGACCACCACCTTTTGAGCCAACTGGTGGTCCACGTCCTAGGAGACCAGGGAGGGGTGGTCTTCCAATGG
GTGGCCCATCACCAATTCTTGCTGCTCCTTTACCACCCCCTCATATGCATGATCCACGCAAAATACGAAGCTATCAAGAC
CTTGATGCTCCTGAAGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15831.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis