Browse Element(s) Details


OsAffx.21993.2.S1_x_at

Description tigr:9638.m03422
TID=OsAffx.21993.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3810011/11hypothetical protein
LOC_Os08g406003/11Thaumatin family protein
LOC_Os04g188102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38060Os.9389.2.S2_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S1_s_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060OsAffx.30709.1.S1_x_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S2_a_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38070OsAffx.7960.1.S1_at11/1110+20058201..20059181expressed protein
LOC_Os10g38080Os.6363.1.S1_at11/1110+20059961..20062501Subtilisin N-terminal Region family protein, expressed
LOC_Os10g38090Os.39214.1.S1_at11/1110+20065112..20069616Cytochrome P450 family protein, expressed
LOC_Os10g38094NANA10+20070971..20071742hypothetical protein
LOC_Os10g38100OsAffx.21993.2.S1_at11/1110+20077727..20078317hypothetical protein
LOC_Os10g38100OsAffx.21993.2.S1_x_at11/1110+20077727..20078317hypothetical protein
LOC_Os10g38110Os.10360.1.S1_at11/1110+20082346..20086498Cytochrome P450 family protein, expressed
LOC_Os10g38120NANA10+20097289..20100849Cytochrome P450 family protein
LOC_Os10g38130OsAffx.30710.1.S1_at11/1110+20101530..20102038hypothetical protein
LOC_Os10g38140Os.13014.1.S1_a_at11/1110+20102322..20103581Glutathione S-transferase, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21993.2.S1_x_at--9--7831Chr10:20078203..20078227 (25 bp)
GGTCACATCGTCCTTGCCGAACTGG
LOC_Os10g38100
OsAffx.21993.2.S1_x_at--848--10691Chr10:20078190..20078214 (25 bp)
TTGCCGAACTGGGTGCTCTTGTCAT
LOC_Os10g38100
OsAffx.21993.2.S1_x_at--370--9591Chr10:20078174..20078198 (25 bp)
TCTTGTCATCGGAGTGGTGGCGCTT
LOC_Os10g38100
OsAffx.21993.2.S1_x_at--293--8392Chr10:20078116..20078140 (25 bp)
GGCGAAGCGATGTACTCCAGCAGGC
LOC_Os10g38100
OsAffx.21993.2.S1_x_at--822--752Chr10:20078107..20078131 (25 bp)
ATGTACTCCAGCAGGCGAAGCGGCG
LOC_Os10g38100
OsAffx.21993.2.S1_x_at--971--7971Chr10:20077964..20077988 (25 bp)
GGATGCATCAGCCTTGTCGTCGTCG
LOC_Os10g38100
OsAffx.21993.2.S1_x_at--182--7211Chr10:20077946..20077970 (25 bp)
GTCGTCGACGGCTCCAGGCGAATGC
LOC_Os10g38100
OsAffx.21993.2.S1_x_at--688--3932Chr10:20077881..20077905 (25 bp)
CGGCGACGCTGTTCGAGGTCACGCT
LOC_Os10g38100
OsAffx.21993.2.S1_x_at--743--4692Chr10:20077836..20077860 (25 bp)
GCGGCGCCGGTGACCTGGACTACTA
LOC_Os10g38100
OsAffx.21993.2.S1_x_at--807--8912Chr10:20077826..20077850 (25 bp)
TGACCTGGACTACTACGACGTGAGC
LOC_Os10g38100
OsAffx.21993.2.S1_x_at--1048--7211Chr10:20077798..20077822 (25 bp)
GTCGACGGGTACAGCCTGCCCATCG
LOC_Os10g38100
Target Sequence 
GGTCACATCGTCCTTGCCGAACTGGGTGCTCTTGTCATCGGAGTGGTGGCGCTTGCGAGGGGATGCGCCGGCGGTGGTGG
TGAAGGAGGCGAAGCGATGTACTCCAGCAGGCGAAGCGGCGGCGTCGACGGGCGAGCGCGGTGGCGGAGTGGCGGCGTCG
GTGGGCGAGCACGGCTGCGGAGAGGCGGCGTCAGCGGGCGAGAGCGGCGGCGGCGGCGGGCGAGCGCCGCTGCGGATGGG
GATGCATCAGCCTTGTCGTCGTCGACGGCTCCAGGCGAATGCGGCGGCCGCTTGGATTGTGGCGGCACGGGCGCCACGCC
GCCGGCGACGCTGTTCGAGGTCACGCTGGGGAAGGGCGGCGGCGGCGGCGGCGCCGGTGACCTGGACTACTACGACGTGA
GCCTCGTCGACGGGTACAGCCTGCCCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21993.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis