Browse Element(s) Details


Os.9389.2.S1_s_at

Description gb:AK108768.1
DB_XREF= gi:32993977
TID=Os.9389.2
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9389 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phospholipase (OSJNBa0096G08.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-H03, full insert sequence.
FL= gb:AK073012.1 gb:AK121075.1 gb:AK108768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3806011/11Phospholipase D beta 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37990OsAffx.20185.1.S1_at10/1110+20022516..20025009hypothetical protein
LOC_Os10g38000OsAffx.30708.1.S1_x_at11/1110+20025393..20025974AP2 domain containing protein
LOC_Os10g38020Os.23271.2.A1_x_at11/1110+20031264..20035426expressed protein
LOC_Os10g38020Os.23271.1.S1_at1/1110+20031264..20035426expressed protein
LOC_Os10g38030Os.21030.1.S1_at11/1110+20035645..20038586Per1-like family protein, expressed
LOC_Os10g38040Os.51639.1.S1_x_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38040Os.11882.1.S1_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38060Os.9389.2.S2_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S1_s_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060OsAffx.30709.1.S1_x_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S2_a_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38050Os.9389.1.A1_a_at11/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed
LOC_Os10g38050OsAffx.12714.1.S1_x_at2/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed
LOC_Os10g38070OsAffx.7960.1.S1_at11/1110+20058201..20059181expressed protein
LOC_Os10g38080Os.6363.1.S1_at11/1110+20059961..20062501Subtilisin N-terminal Region family protein, expressed
LOC_Os10g38090Os.39214.1.S1_at11/1110+20065112..20069616Cytochrome P450 family protein, expressed
LOC_Os10g38094NANA10+20070971..20071742hypothetical protein
LOC_Os10g38100OsAffx.21993.2.S1_at11/1110+20077727..20078317hypothetical protein
LOC_Os10g38100OsAffx.21993.2.S1_x_at11/1110+20077727..20078317hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009395biological_processphospholipid catabolism
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0004630molecular_functionphospholipase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9389.2.S1_s_at--714--2231Chr10:20055003..20055027 (25 bp)
ACAATGATGTCTTCGGTGCTCAGCT
LOC_Os10g38060
Os.9389.2.S1_s_at--265--4831Chr10:20054986..20055010 (25 bp)
GCTCAGCTCATAGGCACAGTGTCGA
LOC_Os10g38060
Os.9389.2.S1_s_at--837--1091Chr10:20054969..20054993 (25 bp)
AGTGTCGATTCCTGCTGAGAAGCTC
LOC_Os10g38060
Os.9389.2.S1_s_at--718--3551Chr10:20054921..20054945 (25 bp)
CATCTACGATGTGCTTGAGTCCAAT
LOC_Os10g38060
Os.9389.2.S1_s_at--1058--2651Chr10:20054893..20054917 (25 bp)
AAGCCATGCGCTCAAGGTGCTGTGT
LOC_Os10g38060
Os.9389.2.S1_s_at--878--6011Chr10:20054787..20054811 (25 bp)
GAGTTCCTAATACTTACTTCCCGAT
LOC_Os10g38060
Os.9389.2.S1_s_at--1158--1831Chr10:20054730..20054754 (25 bp)
ACGCACATGTGCCTGATGGTTGTCT
LOC_Os10g38060
Os.9389.2.S1_s_at--712--4191Chr10:20054705..20054729 (25 bp)
CCCGGATTTCTGTCTTGATCACGGA
LOC_Os10g38060
Os.9389.2.S1_s_at--302--3031Chr10:20054681..20054705 (25 bp)
AATGCGCTATCAGCACGGGCAGTGT
LOC_Os10g38060
Os.9389.2.S1_s_at--992--2711Chr10:20054628..20054652 (25 bp)
AAGCACGGCGGTTGATTTACATTGT
LOC_Os10g38060
Os.9389.2.S1_s_at--580--6671Chr10:20054498..20054522 (25 bp)
GTTGCTTCTTGTGTGGGACGATCCA
LOC_Os10g38060
Target Sequence 
ACAATGATGTCTTCGGTGCTCAGCTCATAGGCACAGTGTCGATTCCTGCTGAGAAGCTCCTTTTTGGAGAAAGGATTAAC
GGCATCTACGATGTGCTTGAGTCCAATGGGAAGCCATGCGCTCAAGGTGCTGTGTTGCGGCTGTCCATACAGTACATCCC
GGTGGCTCAGCTCAAAATGTATCACCATGGTGTCATTGCCGGCCCAGATAGCCTGGGAGTTCCTAATACTTACTTCCCGA
TGCGGCGTGGCAATAGAGTGACACTGTATCAGGACGCACATGTGCCTGATGGTTGTCTCCCGGATTTCTGTCTTGATCAC
GGAATGCGCTATCAGCACGGGCAGTGTTGGCGTGATATCTACGATGCTATATGCCAAGCACGGCGGTTGATTTACATTGT
GGGATGGTCAGTGTTCCACACAATCCACCTCATCAGGGAAGGAGTTGAGAAGATGCCATCACTTGGGGAACTGTTGAAGA
TGAAGTCACAGGAAGGGGTGAGGGTGTTGCTTCTTGTGTGGGACGATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9389.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis