Browse Element(s) Details


Os.39214.1.S1_at

Description gb:AU033151
DB_XREF= gi:3769124
DB_XREF=AU033151
CLONE=S4234_2Z
TID=Os.39214.1
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.39214 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cytochrome P450-like protein (OSJNBb0005J14.2), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3809011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38040Os.51639.1.S1_x_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38040Os.11882.1.S1_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38060Os.9389.2.S2_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S1_s_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060OsAffx.30709.1.S1_x_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S2_a_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38050Os.9389.1.A1_a_at11/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed
LOC_Os10g38050OsAffx.12714.1.S1_x_at2/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed
LOC_Os10g38070OsAffx.7960.1.S1_at11/1110+20058201..20059181expressed protein
LOC_Os10g38080Os.6363.1.S1_at11/1110+20059961..20062501Subtilisin N-terminal Region family protein, expressed
LOC_Os10g38090Os.39214.1.S1_at11/1110+20065112..20069616Cytochrome P450 family protein, expressed
LOC_Os10g38094NANA10+20070971..20071742hypothetical protein
LOC_Os10g38100OsAffx.21993.2.S1_at11/1110+20077727..20078317hypothetical protein
LOC_Os10g38100OsAffx.21993.2.S1_x_at11/1110+20077727..20078317hypothetical protein
LOC_Os10g38110Os.10360.1.S1_at11/1110+20082346..20086498Cytochrome P450 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39214.1.S1_at--798--5551Chr10:20065569..20065593 (25 bp)
GAAAGCCCGTTCAAGTTTACAGCAT
LOC_Os10g38090
Os.39214.1.S1_at--278--10331Chr10:20065461..20065578 (25 bp)
TTTACAGCATTTCAGGCCGGGCCAA
LOC_Os10g38090
Os.39214.1.S1_at--881--10611Chr10:20065368..20065392 (25 bp)
TTCGTGCTCAAACTTCGCGACGAGA
LOC_Os10g38090
Os.39214.1.S1_at--46--3731Chr10:20065280..20065304 (25 bp)
CTACGGCGAGATGAGTGCATGTCAC
LOC_Os10g38090
Os.39214.1.S1_at--544--9051Chr10:20065265..20065289 (25 bp)
TGCATGTCACACTACACAGCCTGGG
LOC_Os10g38090
Os.39214.1.S1_at--342--5071Chr10:20065232..20065256 (25 bp)
GCAGCTGTCACCTGTACACTGTACT
LOC_Os10g38090
Os.39214.1.S1_at--502--7031Chr10:20065219..20065243 (25 bp)
GTACACTGTACTCAATGCAAGTGAC
LOC_Os10g38090
Os.39214.1.S1_at--1075--3751Chr10:20065192..20065216 (25 bp)
CTCTTGTGTGCCAAATCGAATGATA
LOC_Os10g38090
Os.39214.1.S1_at--499--531Chr10:20065178..20065202 (25 bp)
ATCGAATGATATCTGTAGACCTTAA
LOC_Os10g38090
Os.39214.1.S1_at--1134--5831Chr10:20065161..20065185 (25 bp)
GACCTTAATAACGTCTGATCGCGAA
LOC_Os10g38090
Os.39214.1.S1_at--766--4591Chr10:20065141..20065165 (25 bp)
GCGAATGATCCGTATTGCACTCTGG
LOC_Os10g38090
Target Sequence 
GAAAGCCCGTTCAAGTTTACAGCATTTCAGGCCGGGCCAAGAATCTGCCTCGGGAAGGAGTTCGCGTACAGGCAGATGAA
GATCTTCGCGGCCGTGCTGCTCCGTTTCTTCGTGCTCAAACTTCGCGACGAGAAGGAGATCGTTNGCTACAGGACCACGC
TTACACTCGCCATCGANCAGGGTCTCCATCTGACGGCTACGGCGAGATGAGTGCATGTCACACTACACAGCCTGGGCACN
TACNGCAGCTGTCACCTGTACACTGTACTCAATGCAAGTGACANCTCTTGTGTGCCAAATCGAATGATATCTGTAGACCT
TAATAACGTCTGATCGCGAATGATCCGTATTGCACTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis