Browse Element(s) Details


Os.23271.1.S1_at

Description gb:AK106233.1
DB_XREF= gi:32991442
TID=Os.23271.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23271 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0096G08.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-B08, full insert sequence.
FL= gb:AK106233.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g380201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37960OsAffx.20187.1.S1_at11/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.29576.5.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.13325.1.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.29169.1.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37970OsAffx.24701.1.S1_at3/1110+20010619..20012297hypothetical protein
LOC_Os10g37970OsAffx.13010.1.S1_x_at2/1110+20010619..20012297hypothetical protein
LOC_Os10g37980Os.17540.1.S1_at11/1110+20015431..20017319prephenate dehydratase family protein, expressed
LOC_Os10g37990OsAffx.20185.1.S1_at10/1110+20022516..20025009hypothetical protein
LOC_Os10g38000OsAffx.30708.1.S1_x_at11/1110+20025393..20025974AP2 domain containing protein
LOC_Os10g38020Os.23271.2.A1_x_at11/1110+20031264..20035426expressed protein
LOC_Os10g38020Os.23271.1.S1_at1/1110+20031264..20035426expressed protein
LOC_Os10g38030Os.21030.1.S1_at11/1110+20035645..20038586Per1-like family protein, expressed
LOC_Os10g38040Os.51639.1.S1_x_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38040Os.11882.1.S1_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38060Os.9389.2.S2_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S1_s_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060OsAffx.30709.1.S1_x_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S2_a_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38050Os.9389.1.A1_a_at11/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed
LOC_Os10g38050OsAffx.12714.1.S1_x_at2/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed
LOC_Os10g38070OsAffx.7960.1.S1_at11/1110+20058201..20059181expressed protein
LOC_Os10g38080Os.6363.1.S1_at11/1110+20059961..20062501Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23271.1.S1_at--165--6131Chr10:20035384..20035408 (25 bp)
GAGTGGCAATGGAAACAAGAAGATT
LOC_Os10g38020
Os.23271.1.S1_at--1073--3851Chr10:20035415..20035439 (25 bp)
CTGTTTGGATGTAAATGTACACTCT
NONE
Os.23271.1.S1_at--317--7991Chr10:20035421..20035445 (25 bp)
GGATGTAAATGTACACTCTACAGGT
NONE
Os.23271.1.S1_at--207--7051Chr10:20035425..20035449 (25 bp)
GTAAATGTACACTCTACAGGTCATC
NONE
Os.23271.1.S1_at--355--2291Chr10:20035427..20035451 (25 bp)
AAATGTACACTCTACAGGTCATCAA
NONE
Os.23271.1.S1_at--610--751Chr10:20035429..20035453 (25 bp)
ATGTACACTCTACAGGTCATCAACC
NONE
Os.23271.1.S1_at--100--7031Chr10:20035431..20035455 (25 bp)
GTACACTCTACAGGTCATCAACCTA
NONE
Os.23271.1.S1_at--270--2171Chr10:20035433..20035457 (25 bp)
ACACTCTACAGGTCATCAACCTAAG
NONE
Os.23271.1.S1_at--18--1731Chr10:20035435..20035459 (25 bp)
ACTCTACAGGTCATCAACCTAAGGC
NONE
Os.23271.1.S1_at--1096--3711Chr10:20035438..20035462 (25 bp)
CTACAGGTCATCAACCTAAGGCCAA
NONE
Os.23271.1.S1_at--774--2111Chr10:20035440..20035464 (25 bp)
ACAGGTCATCAACCTAAGGCCAATT
NONE
Target Sequence 
GAGTGGCAATGGAAACAAGAAGATTACTGTTCTGTTTGGATGTAAATGTACACTCTACAGGTCATCAACCTAAGGCCAAT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23271.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis