Browse Element(s) Details


OsAffx.13325.1.S1_at

Description tigr:9631.m04187
TID=OsAffx.13325.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4346410/11hypothetical protein
LOC_Os09g044502/11hypothetical protein
LOC_Os04g030802/11subtilase family protein, putative
LOC_Os03g053802/11hypothetical protein
LOC_Os11g181202/11retrotransposon protein, putative, LINE subclass
LOC_Os08g290302/11hypothetical protein
LOC_Os11g229701/11hypothetical protein
LOC_Os04g347101/11hypothetical protein
LOC_Os10g379601/11retrotransposon protein, putative, unclassified
LOC_Os02g491001/11retrotransposon protein, putative, unclassified
LOC_Os01g636101/11retrotransposon protein, putative, unclassified
LOC_Os02g572301/11retrotransposon protein, putative, unclassified
LOC_Os01g220801/11hypothetical protein
LOC_Os06g028801/11retrotransposon protein, putative, unclassified
LOC_Os03g106101/11retrotransposon protein, putative, unclassified
LOC_Os08g022401/11retrotransposon protein, putative, unclassified
LOC_Os02g171301/11hypothetical protein
LOC_Os11g303201/11hypothetical protein
LOC_Os01g286601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43430Os.12861.1.S1_at8/113+24174236..24176470twin-arginine translocation protein, TatA/E family protein, expressed
LOC_Os03g43440Os.19815.1.S1_at11/113+24180544..24182129CBL-interacting serine/threonine-protein kinase 11, putative, expressed
LOC_Os03g43460OsAffx.13324.1.S1_at11/113+24194269..24194700hypothetical protein
LOC_Os03g43464OsAffx.13325.1.S1_at10/113+24201039..24203013hypothetical protein
LOC_Os03g43470OsAffx.13326.1.S1_at11/113+24205015..24206598pentatricopeptide, putative, expressed
LOC_Os03g43480Os.49752.1.S1_at10/113+24207136..24211255heterotrimeric G protein protein gamma subunit, putative, expressed
LOC_Os03g43480OsAffx.25513.1.S1_at10/113+24207136..24211255heterotrimeric G protein protein gamma subunit, putative, expressed
LOC_Os03g43490OsAffx.25514.1.S1_at11/113+24215548..24216863hypothetical protein
LOC_Os03g43500OsAffx.25515.1.S1_at11/113+24218876..24220982hypothetical protein
LOC_Os03g43510Os.23977.1.S1_at11/113+24225603..24232104expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13325.1.S1_at--358--3671Chr03:24201076..24201097 (22 bp)
CTTTTCTAAATGTTTTATGTTGTTG
LOC_Os03g43464
OsAffx.13325.1.S1_at--460--731Chr03:24201577..24201707 (25 bp)
ATGTTGTTGTAACCTGATACTTGTT
LOC_Os03g43464
OsAffx.13325.1.S1_at--806--6631Chr03:24201688..24201709 (22 bp)
GTTGTTGTAACCTGATACTTGTTGG
LOC_Os03g43464
OsAffx.13325.1.S1_at--785--6611Chr03:24201688..24201712 (25 bp)
GTTGTAACCTGATACTTGTTGGAGC
LOC_Os03g43464
OsAffx.13325.1.S1_at--823--70519Chr10:15260293..15260312 (20 bp)
GTAACCTGATACTTGTTGGAGCTTC
NONE
OsAffx.13325.1.S1_at--217--218Chr11:10180969..10181253 (25 bp)
ATTTGCTGGGCTCTATGGTTGAGTA
LOC_Os11g18120
OsAffx.13325.1.S1_at--270--9136Chr09:2365388..2365407 (20 bp)
TGCTGGGCTCTATGGTTGAGTAGAA
LOC_Os09g04450
OsAffx.13325.1.S1_at--945--38928Chr11:12725835..12725858 (24 bp)
CTGGGCTCTATGGTTGAGTAGAAAT
LOC_Os11g22970
OsAffx.13325.1.S1_at--510--2191Chr03:24201763..24201787 (25 bp)
ACAAATCATCATCTACTTCCTATAT
LOC_Os03g43464
OsAffx.13325.1.S1_at--172--431Chr03:24201767..24201791 (25 bp)
ATCATCATCTACTTCCTATATGCAG
LOC_Os03g43464
OsAffx.13325.1.S1_at--1154--3551NONE
CATCATCTACTTCCTATATGCAGTT
NONE
Target Sequence 
CTTTTCTAAATGTTTTATGTTGTTGTAACCTGATACTTGTTGGAGCTTCTGCCATTTGCTGGGCTCTATGGTTGAGTAGA
AATGGTATAGTTTTTGACAAATCATCATCTACTTCCTATATGCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13325.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis