Browse Element(s) Details


OsAffx.13324.1.S1_at

Description tigr:9631.m04186
TID=OsAffx.13324.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4346011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43420Os.6868.1.S1_at11/113+24169440..24173638single-strand binding protein, expressed
LOC_Os03g43430Os.12861.1.S1_at8/113+24174236..24176470twin-arginine translocation protein, TatA/E family protein, expressed
LOC_Os03g43440Os.19815.1.S1_at11/113+24180544..24182129CBL-interacting serine/threonine-protein kinase 11, putative, expressed
LOC_Os03g43460OsAffx.13324.1.S1_at11/113+24194269..24194700hypothetical protein
LOC_Os03g43464OsAffx.13325.1.S1_at10/113+24201039..24203013hypothetical protein
LOC_Os03g43470OsAffx.13326.1.S1_at11/113+24205015..24206598pentatricopeptide, putative, expressed
LOC_Os03g43480Os.49752.1.S1_at10/113+24207136..24211255heterotrimeric G protein protein gamma subunit, putative, expressed
LOC_Os03g43480OsAffx.25513.1.S1_at10/113+24207136..24211255heterotrimeric G protein protein gamma subunit, putative, expressed
LOC_Os03g43490OsAffx.25514.1.S1_at11/113+24215548..24216863hypothetical protein
LOC_Os03g43500OsAffx.25515.1.S1_at11/113+24218876..24220982hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13324.1.S1_at--43--6031Chr03:24194634..24194658 (25 bp)
GAGATCGGCGTGACCGGCAATGGTA
LOC_Os03g43460
OsAffx.13324.1.S1_at--79--4671Chr03:24194627..24194651 (25 bp)
GCGTGACCGGCAATGGTAGGGAGGT
LOC_Os03g43460
OsAffx.13324.1.S1_at--41--6931Chr03:24194363..24194636 (25 bp)
GTAGGGAGGTGAAAGTCCAGTGGAT
LOC_Os03g43460
OsAffx.13324.1.S1_at--1118--1091Chr03:24194345..24194369 (25 bp)
AGTGGATGGGTGACGATGGCGCCTC
LOC_Os03g43460
OsAffx.13324.1.S1_at--879--5771Chr03:24194334..24194358 (25 bp)
GACGATGGCGCCTCTAGTGTCATGG
LOC_Os03g43460
OsAffx.13324.1.S1_at--11--1891Chr03:24194333..24194357 (25 bp)
ACGATGGCGCCTCTAGTGTCATGGC
LOC_Os03g43460
OsAffx.13324.1.S1_at--72--871Chr03:24194330..24194354 (25 bp)
ATGGCGCCTCTAGTGTCATGGCCTT
LOC_Os03g43460
OsAffx.13324.1.S1_at--695--4451Chr03:24194325..24194349 (25 bp)
GCCTCTAGTGTCATGGCCTTCTTGG
LOC_Os03g43460
OsAffx.13324.1.S1_at--303--3611Chr03:24194305..24194329 (25 bp)
CTTGGAGGTGTCATCTAGGAGATCT
LOC_Os03g43460
OsAffx.13324.1.S1_at--158--8031Chr03:24194302..24194326 (25 bp)
GGAGGTGTCATCTAGGAGATCTCTT
LOC_Os03g43460
OsAffx.13324.1.S1_at--182--7751Chr03:24194299..24194323 (25 bp)
GGTGTCATCTAGGAGATCTCTTGTT
LOC_Os03g43460
Target Sequence 
GAGATCGGCGTGACCGGCAATGGTAGGGAGGTGAAAGTCCAGTGGATGGGTGACGATGGCGCCTCTAGTGTCATGGCCTT
CTTGGAGGTGTCATCTAGGAGATCTCTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis