Browse Element(s) Details


Os.6868.1.S1_at

Description gb:AK059181.1
DB_XREF= gi:32969199
TID=Os.6868.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6868 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-G01, full insert sequence.
FL= gb:AK059181.1 gb:AK068169.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4342011/11single-strand binding protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43390Os.9883.2.S1_at11/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43390Os.9883.1.A1_at10/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43390OsAffx.7847.1.S1_at1/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43400OsAffx.25512.1.S1_s_at10/113+24152848..24156220Auxin-responsive protein IAA17, putative, expressed
LOC_Os03g43400OsAffx.25512.1.S1_x_at8/113+24152848..24156220Auxin-responsive protein IAA17, putative, expressed
LOC_Os03g43410Os.9945.1.S1_at11/113+24166753..24168059AUX/IAA family protein, expressed
LOC_Os03g43420Os.6868.1.S1_at11/113+24169440..24173638single-strand binding protein, expressed
LOC_Os03g43430Os.12861.1.S1_at8/113+24174236..24176470twin-arginine translocation protein, TatA/E family protein, expressed
LOC_Os03g43440Os.19815.1.S1_at11/113+24180544..24182129CBL-interacting serine/threonine-protein kinase 11, putative, expressed
LOC_Os03g43460OsAffx.13324.1.S1_at11/113+24194269..24194700hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6868.1.S1_at--960--6151Chr03:24169977..24170001 (25 bp)
GAGGTATCCAGACTTCAAGCACAAA
LOC_Os03g43420
Os.6868.1.S1_at--741--7671Chr03:24169906..24169930 (25 bp)
GGGTTATCTCCCAGTTGGCAATTCT
LOC_Os03g43420
Os.6868.1.S1_at--251--8871Chr03:24169821..24169845 (25 bp)
TGATGACTTCATGACACCTGACACC
LOC_Os03g43420
Os.6868.1.S1_at--626--8751Chr03:24169722..24169746 (25 bp)
TGTACTACTGCGATAGTGCACCTGC
LOC_Os03g43420
Os.6868.1.S1_at--831--1751Chr03:24169703..24169727 (25 bp)
ACCTGCGCTCCTTCAATTTTGTTGT
LOC_Os03g43420
Os.6868.1.S1_at--660--1191Chr03:24169660..24169684 (25 bp)
AGTTTACCATAGAGGCGTGCGGCCA
LOC_Os03g43420
Os.6868.1.S1_at--415--7311Chr03:24169644..24169668 (25 bp)
GTGCGGCCATCTGTTGTAGTCAGTA
LOC_Os03g43420
Os.6868.1.S1_at--71--7051Chr03:24169598..24169622 (25 bp)
GTAAAGAATCGGATGGCCTTCCCTT
LOC_Os03g43420
Os.6868.1.S1_at--1067--8411Chr03:24169584..24169608 (25 bp)
GGCCTTCCCTTAAATTTGCCTGAGA
LOC_Os03g43420
Os.6868.1.S1_at--1088--8671Chr03:24169540..24169564 (25 bp)
TGTGTTTGCATCAGCTGAGCCTCAA
LOC_Os03g43420
Os.6868.1.S1_at--416--471Chr03:24169446..24169470 (25 bp)
ATCTGCCATGAGTTGTGACCTGTAA
LOC_Os03g43420
Target Sequence 
GAGGTATCCAGACTTCAAGCACAAACACACCGGTGAAGCATTGTGGGTTGATGGGAGGAACAATCCAAATTGGGTTATCT
CCCAGTTGGCAATTCTGGACTCGAGAATGGGTTCTCTTCAAGGCAATGATAGGAAACCAGTTGCCTTTATGTATGCTGAT
GACTTCATGACACCTGACACCGACACTGAAGCCCATATGTGAAAGGAAACCTCCCATTCACCGATTTATCATAGCACTAT
GTATTAGATAGAAAATGTACTACTGCGATAGTGCACCTGCGCTCCTTCAATTTTGTTGTACATAGGTAGAATCGTGAAGT
TTACCATAGAGGCGTGCGGCCATCTGTTGTAGTCAGTAGTAATGACAAATGCAGATGTAGTAAAGAATCGGATGGCCTTC
CCTTAAATTTGCCTGAGAAACGGTGTACATCACTTGGTGTGTTTGCATCAGCTGAGCCTCAACTGACAAGTGACTTAATT
ACATTGGCATGCTCATTGGCTTAGATGGTGCAACAATGCAATCATCATCATATCTGCCATGAGTTGTGACCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis