Browse Element(s) Details


OsAffx.25512.1.S1_s_at

Description tigr:9631.m04181
TID=OsAffx.25512.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=auxin-induced protein aux28. (soybean
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4340010/11Auxin-responsive protein IAA17, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43360OsAffx.13323.1.S1_at11/113+24128721..24134539Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g43374NANA3+24138620..24139265retrotransposon protein, putative, unclassified
LOC_Os03g43390Os.9883.2.S1_at11/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43390Os.9883.1.A1_at10/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43390OsAffx.7847.1.S1_at1/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43400OsAffx.25512.1.S1_s_at10/113+24152848..24156220Auxin-responsive protein IAA17, putative, expressed
LOC_Os03g43400OsAffx.25512.1.S1_x_at8/113+24152848..24156220Auxin-responsive protein IAA17, putative, expressed
LOC_Os03g43410Os.9945.1.S1_at11/113+24166753..24168059AUX/IAA family protein, expressed
LOC_Os03g43420Os.6868.1.S1_at11/113+24169440..24173638single-strand binding protein, expressed
LOC_Os03g43430Os.12861.1.S1_at8/113+24174236..24176470twin-arginine translocation protein, TatA/E family protein, expressed
LOC_Os03g43440Os.19815.1.S1_at11/113+24180544..24182129CBL-interacting serine/threonine-protein kinase 11, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009630biological_processgravitropism
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0010102biological_processlateral root morphogenesis
GO:0040008biological_processregulation of growth
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005837cellular_component26S proteasome
GO:0008180cellular_componentsignalosome complex
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25512.1.S1_s_at--1029--8371Chr03:24155958..24155982 (25 bp)
GGCGAGCCAGAGCAGCGTGGTCACC
LOC_Os03g43400
OsAffx.25512.1.S1_s_at--481--7491Chr03:24155942..24155966 (25 bp)
GTGGTCACCGCGGAGCCCGATCCCG
LOC_Os03g43400
OsAffx.25512.1.S1_s_at--74--10531NONE
TTCACCATCGGCAAGTGTGGGTCCC
NONE
OsAffx.25512.1.S1_s_at--328--3551Chr03:24153850..24153870 (21 bp)
CATCGGCAAGTGTGGGTCCCATCAG
LOC_Os03g43400
OsAffx.25512.1.S1_s_at--650--2871Chr03:24153843..24153867 (25 bp)
AAGTGTGGGTCCCATCAGCAGCTGA
LOC_Os03g43400
OsAffx.25512.1.S1_s_at--905--7471Chr03:24153841..24153865 (25 bp)
GTGTGGGTCCCATCAGCAGCTGAAG
LOC_Os03g43400
OsAffx.25512.1.S1_s_at--701--8631Chr03:24153838..24153862 (25 bp)
TGGGTCCCATCAGCAGCTGAAGGAG
LOC_Os03g43400
OsAffx.25512.1.S1_s_at--447--1511Chr03:24153827..24153851 (25 bp)
AGCAGCTGAAGGAGAGCAATAAGCT
LOC_Os03g43400
OsAffx.25512.1.S1_s_at--506--5171Chr03:24153812..24153836 (25 bp)
GCAATAAGCTGAGAGATGACCTGGA
LOC_Os03g43400
OsAffx.25512.1.S1_s_at--571--9791Chr03:24153808..24153832 (25 bp)
TAAGCTGAGAGATGACCTGGAGTAC
LOC_Os03g43400
OsAffx.25512.1.S1_s_at--342--6031Chr03:24153800..24153824 (25 bp)
GAGATGACCTGGAGTACGTGCCGAC
LOC_Os03g43400
Target Sequence 
GGCGAGCCAGAGCAGCGTGGTCACCGCGGAGCCCGATCCCGACAAGCCGCGCGCGCCCAAGGCGCAGGTGGTGGGGTGGC
CGCCGGTCCGGTCGTTCAGGAAGAACGTGCTCGCCGAGAAATGCAAGGCGGCGGCGCTGGTGAAGGTGAGCATGGACGGC
GCGCCGTACCTGAGGAAGATCGACGTCGCCATGTACAAGAGCTACCCGGAGTTGTCCATGGCGTTCCAGAACATGTTCAC
CTCCTTCACCATCGGCAAGTGTGGGTCCCATCAGCAGCTGAAGGAGAGCAATAAGCTGAGAGATGACCTGGAGTACGTGC
CGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25512.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis