Browse Element(s) Details


OsAffx.13323.1.S1_at

Description tigr:9631.m04178
TID=OsAffx.13323.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable C3HC4 zinc finger protein (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4336011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43330OsAffx.13387.3.S1_x_at9/113+24108594..24111062hypothetical protein
LOC_Os03g43330OsAffx.13387.3.S1_at8/113+24108594..24111062hypothetical protein
LOC_Os03g43340OsAffx.22604.1.S1_x_at2/113+24114851..24116388hypothetical protein
LOC_Os03g43350OsAffx.25511.1.S1_at11/113+24123273..24125821hypothetical protein
LOC_Os03g43360OsAffx.13323.1.S1_at11/113+24128721..24134539Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g43374NANA3+24138620..24139265retrotransposon protein, putative, unclassified
LOC_Os03g43390Os.9883.2.S1_at11/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43390Os.9883.1.A1_at10/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43390OsAffx.7847.1.S1_at1/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43400OsAffx.25512.1.S1_s_at10/113+24152848..24156220Auxin-responsive protein IAA17, putative, expressed
LOC_Os03g43400OsAffx.25512.1.S1_x_at8/113+24152848..24156220Auxin-responsive protein IAA17, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13323.1.S1_at--916--1251Chr03:24130863..24130887 (25 bp)
AGATACCTTCCCATTATTTGCGAAT
LOC_Os03g43360
OsAffx.13323.1.S1_at--445--1311Chr03:24130141..24130165 (25 bp)
AGATGGAAACATACCTGCCTCGTCA
LOC_Os03g43360
OsAffx.13323.1.S1_at--813--3771Chr03:24130123..24130147 (25 bp)
CTCGTCAATCCAGAAGTACCTCATG
LOC_Os03g43360
OsAffx.13323.1.S1_at--835--9611Chr03:24130103..24130127 (25 bp)
TCATGCAGAAGCTTGGCCTTCCTAA
LOC_Os03g43360
OsAffx.13323.1.S1_at--496--2211Chr03:24129022..24129046 (25 bp)
ACAACCCCTGTGCAATTTAGTAGAG
LOC_Os03g43360
OsAffx.13323.1.S1_at--760--911Chr03:24128953..24128977 (25 bp)
AGGCTCCCCTGCCAAGGAGTTTGTA
LOC_Os03g43360
OsAffx.13323.1.S1_at--609--9771Chr03:24128930..24128954 (25 bp)
TAATGGTGCTAACTTATGGGCGGCC
LOC_Os03g43360
OsAffx.13323.1.S1_at--866--6831Chr03:24128834..24128858 (25 bp)
GTTTCCTGCCATTTTATTGGGCCCA
LOC_Os03g43360
OsAffx.13323.1.S1_at--430--7751Chr03:24128799..24128823 (25 bp)
GGTGATCCGAGATAAACCTCCTTGA
LOC_Os03g43360
OsAffx.13323.1.S1_at--365--1751Chr03:24128784..24128808 (25 bp)
ACCTCCTTGATACATACATAGCCTC
LOC_Os03g43360
OsAffx.13323.1.S1_at--311--1171Chr03:24128756..24128780 (25 bp)
AGTCACAATGCGGTTGGCTCACTTG
LOC_Os03g43360
Target Sequence 
AGATACCTTCCCATTATTTGCGAATAAAAGATGGAAACATACCTGCCTCGTCAATCCAGAAGTACCTCATGCAGAAGCTT
GGCCTTCCTAACGAGGCAGAGATAATGGAAACTTTTATTGAACTCAGTCAATTACATCAAGGTCGAAATAAATTGCTGCG
GGCAGCCAGTGAACCCTACACAACCCCTGTGCAATTTAGTAGAGGTGTGGTTGAGGGGGCGATCAACACAGACAACACAG
ACCATGATAGGCTCCCCTGCCAAGGAGTTTGTAATGGTGCTAACTTATGGGCGGCCAAAGGCCATCACGCCATGAATGGC
ACCACAAACACAAGGCTCAAGCCATTTTTCGCCTAGAGGCGGGTCCCGTTTCCTGCCATTTTATTGGGCCCATGGAAGAA
GAGGTGATCCGAGATAAACCTCCTTGATACATACATAGCCTCACAAGTCACAATGCGGTTGGCTCACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis