Browse Element(s) Details


OsAffx.22604.1.S1_x_at

Description gb:NM_185406.1
DB_XREF= gi:34897897
TID=OsAffx.22604.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g300402/11esterase PIR7B, putative
LOC_Os04g484242/11
LOC_Os02g329202/11hypothetical protein
LOC_Os11g347202/11Ser/Thr protein phosphatase family protein, expressed
LOC_Os05g420802/11expressed protein
LOC_Os03g433402/11hypothetical protein
LOC_Os11g254201/11hypothetical protein
LOC_Os02g384201/11hypothetical protein
LOC_Os07g253101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g389101/11hypothetical protein
LOC_Os12g258701/11O-methyltransferase ZRP4, putative
LOC_Os01g676201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30000Os.46012.2.S1_x_at7/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000Os.27088.1.A1_x_at4/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000Os.46012.3.S1_x_at3/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.19145.1.S1_x_at2/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.30217.1.S1_x_at2/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000Os.54691.1.S1_x_at1/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.10222.1.S1_x_at1/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.19145.1.S1_at1/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30010NANA11+16950641..16952484NB-ARC domain containing protein
LOC_Os11g30020OsAffx.19542.3.S1_x_at4/1111+16953790..16961390retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g30020Os.32727.1.S1_at1/1111+16953790..16961390retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g30030OsAffx.31217.1.S1_at11/1111+16967881..16968544Esterase PIR7A, putative
LOC_Os11g30040OsAffx.19078.1.S1_at11/1111+16969668..16970509esterase PIR7B, putative
LOC_Os11g30040OsAffx.22604.1.S1_x_at2/1111+16969668..16970509esterase PIR7B, putative
LOC_Os11g30050OsAffx.7253.1.S1_at11/1111+16976719..16980538NB-ARC domain containing protein
LOC_Os11g30060OsAffx.7254.1.S1_at11/1111+16982135..16986830NB-ARC domain containing protein
LOC_Os11g30070NANA11+16992638..16995970transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0016311biological_processdephosphorylation
GO:0030643biological_processphosphate ion homeostasis
GO:0005829cellular_componentcytosol
GO:0009986cellular_componentcell surface
GO:0003993molecular_functionacid phosphatase activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0008171molecular_functionO-methyltransferase activity
GO:0016787molecular_functionhydrolase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
GO:0016791molecular_functionphosphoric monoester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22604.1.S1_x_at--444--92385Chr12:13770749..13770773 (25 bp)
TCCTCCTGCCACGTCGGTTCGCGTG
NONE
OsAffx.22604.1.S1_x_at--222--71951Chr12:6742969..6742988 (20 bp)
GTCGGTTCGCGTGCGCCACGAACAA
NONE
OsAffx.22604.1.S1_x_at--480--6711NONE
GTTCGCGTGCGCCACGAACAAAGAT
NONE
OsAffx.22604.1.S1_x_at--564--10631NONE
TTCGCGTGCGCCACGAACAAAGATG
NONE
OsAffx.22604.1.S1_x_at--257--9351NONE
TCGCGTGCGCCACGAACAAAGATGG
NONE
OsAffx.22604.1.S1_x_at--972--4651NONE
GCGTGCGCCACGAACAAAGATGGTA
NONE
OsAffx.22604.1.S1_x_at--254--4011NONE
CGTGCGCCACGAACAAAGATGGTAT
NONE
OsAffx.22604.1.S1_x_at--554--7291NONE
GTGCGCCACGAACAAAGATGGTATT
NONE
OsAffx.22604.1.S1_x_at--636--9151NONE
TGCGCCACGAACAAAGATGGTATTG
NONE
OsAffx.22604.1.S1_x_at--529--4551NONE
GCGCCACGAACAAAGATGGTATTGT
NONE
OsAffx.22604.1.S1_x_at--1015--4151NONE
CGCCACGAACAAAGATGGTATTGTA
NONE
Target Sequence 
TCCTCCTGCCACGTCGGTTCGCGTGCGCCACGAACAAAGATGGTATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22604.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis