Browse Element(s) Details


Os.32727.1.S1_at

Description gb:AK103106.1
DB_XREF= gi:32988315
TID=Os.32727.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32727 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative endopolygalacturonase (P0501G01.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118O22, full insert sequence.
FL= gb:AK103106.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4349010/11Polygalacturonase precursor, putative, expressed
LOC_Os11g300201/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43470NANA1+25219023..25219610hypothetical protein
LOC_Os01g43480Os.648.1.S1_at11/111+25221554..25226354ATPase, AAA family protein, expressed
LOC_Os01g43490Os.32727.1.S1_at10/111+25226356..25228661Polygalacturonase precursor, putative, expressed
LOC_Os01g43500OsAffx.21341.1.S1_s_at11/111+25231167..25234607hypothetical protein
LOC_Os01g43500OsAffx.21341.2.S1_at10/111+25231167..25234607hypothetical protein
LOC_Os01g43510OsAffx.9111.2.S1_at11/111+25235591..25236542hypothetical protein
LOC_Os01g43520Os.652.1.S2_a_at11/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.652.1.S1_a_at11/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.23622.1.A1_at9/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.10728.1.S1_at1/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.55119.1.S1_at1/111+25240399..25250864ceramidase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32727.1.S1_at--1145--4171Chr01:25226896..25226915 (20 bp)
CCCATCAGAGCTCCGACGTGCAGAT
LOC_Os01g43490
Os.32727.1.S1_at--603--8931Chr01:25226863..25226887 (25 bp)
TGACGTACACCGACATCCAGGGTTC
LOC_Os01g43490
Os.32727.1.S1_at--415--3471Chr01:25226828..25226852 (25 bp)
CAGGTGGCGGTCAAGTTCGACTGCA
LOC_Os01g43490
Os.32727.1.S1_at--1039--3831Chr01:25226774..25226798 (25 bp)
CTGCAGGACATCAAGCTCACGTTCG
LOC_Os01g43490
Os.32727.1.S1_at--421--591Chr01:25226687..25226711 (25 bp)
ATGCCTCCCAGTTGCCTGTAACGCT
LOC_Os01g43490
Os.32727.1.S1_at--761--8731Chr01:25226671..25226695 (25 bp)
TGTAACGCTTTACCGCCAAATTGGA
LOC_Os01g43490
Os.32727.1.S1_at--394--3151Chr01:25226641..25226665 (25 bp)
AATTCTTGTAAACCGAGTACTCACT
LOC_Os01g43490
Os.32727.1.S1_at--598--7011Chr01:25226625..25226649 (25 bp)
GTACTCACTATTTACACATGGACGA
LOC_Os01g43490
Os.32727.1.S1_at--751--2013Chr11:16959878..16959948 (24 bp)
ACTCACAGTACTAGATCCAACGATC
LOC_Os11g30020
Os.32727.1.S1_at--91--9971Chr01:25226412..25226436 (25 bp)
TACCGTGAGGTCCTGTACCTCGAGG
LOC_Os01g43490
Os.32727.1.S1_at--644--9771Chr01:25226356..25226380 (25 bp)
TAAGAAACTTCAACGATTCCAGCTC
NONE
Target Sequence 
CCCATCAGAGCTCCGACGTGCAGATCAGCGGGGTGACGTACACCGACATCCAGGGTTCGTCGGCGTCGCAGGTGGCGGTC
AAGTTCGACTGCAGCGCGAGCAAACCCTGCAGCGGGCTCGGCCTGCAGGACATCAAGCTCACGTTCGACGGCGGCAAGCC
GGCGGAGGCGACCTGCCAACACGCCGACGGCACGGCCTCCGGTGTCCTCATGCCTCCCAGTTGCCTGTAACGCTTTACCG
CCAAATTGGAGAAACAATTCTTGTAAACCGAGTACTCACTATTTACACATGGACGAAGATACAACGGATAGTATAGTGAA
TTAGTGATATTAACAAGATATTTGATTCGGTCCAACAAAAAACGGATAGTATAGTGAATTAGTGATATTAACAAGATATT
TGATTCGGTCCAATAAAAAGTACCTCGACGTACCGGTAGTCCGGTAACTCACAGTACTAGATCCAACGATCGGAAATAAT
TTGGTACCGTGAGGTCCTGTACCTCGAGGTACTTTTTGTTGGACCGGAGCAAATCTCTATTAAGAAACTTCAACGATTCC
AGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis