Browse Element(s) Details


OsAffx.21341.1.S1_s_at

Description gb:NM_192871.1
DB_XREF= gi:34912825
GEN=P0501G01.22
TID=OsAffx.21341.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0501G01.22 (P0501G01.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4350011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43470NANA1+25219023..25219610hypothetical protein
LOC_Os01g43480Os.648.1.S1_at11/111+25221554..25226354ATPase, AAA family protein, expressed
LOC_Os01g43490Os.32727.1.S1_at10/111+25226356..25228661Polygalacturonase precursor, putative, expressed
LOC_Os01g43500OsAffx.21341.1.S1_s_at11/111+25231167..25234607hypothetical protein
LOC_Os01g43500OsAffx.21341.2.S1_at10/111+25231167..25234607hypothetical protein
LOC_Os01g43510OsAffx.9111.2.S1_at11/111+25235591..25236542hypothetical protein
LOC_Os01g43520Os.652.1.S2_a_at11/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.652.1.S1_a_at11/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.23622.1.A1_at9/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.10728.1.S1_at1/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.55119.1.S1_at1/111+25240399..25250864ceramidase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21341.1.S1_s_at--854--3931Chr01:25231455..25231479 (25 bp)
CGGCTCGGGCGGTCACAGGGCGGGT
LOC_Os01g43500
OsAffx.21341.1.S1_s_at--217--8471Chr01:25231479..25231503 (25 bp)
TGGCCGACGCGAGCACGGACAGCTT
LOC_Os01g43500
OsAffx.21341.1.S1_s_at--1008--1491Chr01:25231490..25231514 (25 bp)
AGCACGGACAGCTTGGCGTCCCTTG
LOC_Os01g43500
OsAffx.21341.1.S1_s_at--264--8351Chr01:25231570..25231594 (25 bp)
GGCGGCATTGTGGTCGACCTCCGAA
LOC_Os01g43500
OsAffx.21341.1.S1_s_at--850--3591Chr01:25231575..25231599 (25 bp)
CATTGTGGTCGACCTCCGAAGAGGT
LOC_Os01g43500
OsAffx.21341.1.S1_s_at--653--1751Chr01:25231586..25231610 (25 bp)
ACCTCCGAAGAGGTTGCTGTGGAAA
LOC_Os01g43500
OsAffx.21341.1.S1_s_at--10--8511Chr01:25231605..25231629 (25 bp)
TGGAAAGGTCCCTCCATGGCGGAGA
LOC_Os01g43500
OsAffx.21341.1.S1_s_at--1011--2891Chr01:25231609..25231633 (25 bp)
AAGGTCCCTCCATGGCGGAGACACG
LOC_Os01g43500
OsAffx.21341.1.S1_s_at--160--3571Chr01:25231649..25231673 (25 bp)
CATCACGCGCGGCATAGACGGGAAT
LOC_Os01g43500
OsAffx.21341.1.S1_s_at--974--4251Chr01:25231723..25231747 (25 bp)
CCGGCCCTTGCGACCGGGTGATAGA
LOC_Os01g43500
OsAffx.21341.1.S1_s_at--983--1771Chr01:25231735..25231759 (25 bp)
ACCGGGTGATAGACAAATTGAGGGA
LOC_Os01g43500
Target Sequence 
CGGCTCGGGCGGTCACAGGGCGGGTGGCCGACGCGAGCACGGACAGCTTGGCGTCCCTTGCCCTCCACCTCTGCTCCTGT
GGCGTGGGGGCCTTGGTGGACGCCGTGGCGGAGGCGGCGGCATTGTGGTCGACCTCCGAAGAGGTTGCTGTGGAAAGGTC
CCTCCATGGCGGAGACACGCGGTGGTGGGAGGCGCATCACGCGCGGCATAGACGGGAATGGAGAGGGACGTCACCAGAAG
AGCAGGAGGAGGAGGGTCGACAACCCCGCCGGCCCTTGCGACCGGGTGATAGACAAATTGAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21341.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis