Browse Element(s) Details


Os.652.1.S1_a_at

Description gb:AK071073.1
DB_XREF= gi:32981096
TID=Os.652.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.652 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0501G01.24 (P0501G01.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023076B04, full insert sequence.
FL= gb:AK069738.1 gb:AK071073.1 gb:AK099625.1 gb:AK071952.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4352011/11ceramidase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43470NANA1+25219023..25219610hypothetical protein
LOC_Os01g43480Os.648.1.S1_at11/111+25221554..25226354ATPase, AAA family protein, expressed
LOC_Os01g43490Os.32727.1.S1_at10/111+25226356..25228661Polygalacturonase precursor, putative, expressed
LOC_Os01g43500OsAffx.21341.1.S1_s_at11/111+25231167..25234607hypothetical protein
LOC_Os01g43500OsAffx.21341.2.S1_at10/111+25231167..25234607hypothetical protein
LOC_Os01g43510OsAffx.9111.2.S1_at11/111+25235591..25236542hypothetical protein
LOC_Os01g43520Os.652.1.S2_a_at11/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.652.1.S1_a_at11/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.23622.1.A1_at9/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.10728.1.S1_at1/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.55119.1.S1_at1/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43530NANA1+25259750..25260416Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os01g43540Os.9338.1.S1_at9/111+25264524..25269730SGS domain containing protein, expressed
LOC_Os01g43550Os.57382.1.S1_at11/111+25272130..25274142WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0017040molecular_functionceramidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.652.1.S1_a_at--155--31Chr01:25247317..25247341 (25 bp)
ATTGGTTTGCAACTCATGGAACATC
LOC_Os01g43520
Os.652.1.S1_a_at--399--1671Chr01:25247250..25247274 (25 bp)
AGCCGCTGCACGCTTCATGGAAGAC
LOC_Os01g43520
Os.652.1.S1_a_at--685--2971Chr01:25247214..25247238 (25 bp)
AATGGGCTTGCCCAAACAGTCAGCT
LOC_Os01g43520
Os.652.1.S1_a_at--1081--2751Chr01:25247156..25247180 (25 bp)
AAGACATCTGTACTTCCTCGGAGAG
LOC_Os01g43520
Os.652.1.S1_a_at--343--31Chr01:25246984..25247008 (25 bp)
ATTGGCATCATCCTATGAGGCCTCA
LOC_Os01g43520
Os.652.1.S1_a_at--277--4691Chr01:25246951..25246975 (25 bp)
GCGGTTGGCAGGTTCAAGTATCACT
LOC_Os01g43520
Os.652.1.S1_a_at--640--6831Chr01:25246887..25246911 (25 bp)
GTTTCTGCATTTTGTCAGTCCAATT
LOC_Os01g43520
Os.652.1.S1_a_at--264--3071Chr01:25246815..25246839 (25 bp)
AATCTTCCCTGTGACTTCAATCACA
LOC_Os01g43520
Os.652.1.S1_a_at--944--5471Chr01:25246770..25246794 (25 bp)
GAACTTTGCTATGGACGAGGCCCAG
LOC_Os01g43520
Os.652.1.S1_a_at--45--6231Chr01:25246666..25246778 (25 bp)
GAGGCCCAGGATACCCTGATGAGTT
LOC_Os01g43520
Os.652.1.S1_a_at--95--6231Chr01:25246649..25246673 (25 bp)
GATGAGTTTGAAAGTACCCGTGTTA
LOC_Os01g43520
Target Sequence 
ATTGGTTTGCAACTCATGGAACATCAATGAGCCGTACAAATTCTTTGATAAGTGGTGATAACAAGGGAGCCGCTGCACGC
TTCATGGAAGACTGGGCTGAACAAATGGGCTTGCCCAAACAGTCAGCTCATGCAAATTCTGATGATTTGAGATCTTTGCA
CAAGACATCTGTACTTCCTCGGAGAGTTTCTACTATAATTCCTGAACCAAATGAGATAACTGATGACTTGATACAATTGG
CATCATCCTATGAGGCCTCAGGTGGCAGGCGGTTGGCAGGTTCAAGTATCACTAGGCGCATTAGAAGTACTCAACAAAAC
AAACCTAAATTTGTTTCTGCATTTTGTCAGTCCAATTGTGGAGATGTTAGTCCAAATGTCCTTGGAACATTTTGCATAGA
CACCAATCTTCCCTGTGACTTCAATCACAGCACATGTAATGGGAAAAATGAACTTTGCTATGGACGAGGCCCAGGATACC
CTGATGAGTTTGAAAGTACCCGTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.652.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis