Browse Element(s) Details


Os.648.1.S1_at

Description gb:AK066142.1
DB_XREF= gi:32976160
TID=Os.648.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.648 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0501G01.20 (P0501G01.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055O07, full insert sequence.
FL= gb:AK066142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4348011/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43470NANA1+25219023..25219610hypothetical protein
LOC_Os01g43480Os.648.1.S1_at11/111+25221554..25226354ATPase, AAA family protein, expressed
LOC_Os01g43490Os.32727.1.S1_at10/111+25226356..25228661Polygalacturonase precursor, putative, expressed
LOC_Os01g43500OsAffx.21341.1.S1_s_at11/111+25231167..25234607hypothetical protein
LOC_Os01g43500OsAffx.21341.2.S1_at10/111+25231167..25234607hypothetical protein
LOC_Os01g43510OsAffx.9111.2.S1_at11/111+25235591..25236542hypothetical protein
LOC_Os01g43520Os.652.1.S2_a_at11/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.652.1.S1_a_at11/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.23622.1.A1_at9/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.10728.1.S1_at1/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.55119.1.S1_at1/111+25240399..25250864ceramidase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.648.1.S1_at--121--2311Chr01:25225841..25225865 (25 bp)
AAAGGCGATGCTGGAGAGACTACCC
LOC_Os01g43480
Os.648.1.S1_at--49--6011Chr01:25225854..25225878 (25 bp)
GAGAGACTACCCTGAGACCGCTAAA
LOC_Os01g43480
Os.648.1.S1_at--523--3851Chr01:25225865..25225889 (25 bp)
CTGAGACCGCTAAACATGGAGGACT
LOC_Os01g43480
Os.648.1.S1_at--508--5131Chr01:25225898..25226031 (25 bp)
GCAAAGGATGAAGTCGCCGCTAGCT
LOC_Os01g43480
Os.648.1.S1_at--721--4851Chr01:25226034..25226058 (25 bp)
GCTAGCGAAGGCGTTGTGATGAATC
LOC_Os01g43480
Os.648.1.S1_at--1137--8191Chr01:25226066..25226090 (25 bp)
GGAATGGAATGAGCTCTACGGCAAA
LOC_Os01g43480
Os.648.1.S1_at--637--1631Chr01:25226104..25226128 (25 bp)
AGCGGGAGCAACTGACATACTTCTT
LOC_Os01g43480
Os.648.1.S1_at--489--10331Chr01:25226241..25226265 (25 bp)
TTTAGGAGTAGTAGTCGTCAGACCC
LOC_Os01g43480
Os.648.1.S1_at--526--7211Chr01:25226254..25226278 (25 bp)
GTCGTCAGACCCGATAATTTGATTG
LOC_Os01g43480
Os.648.1.S1_at--1081--10251Chr01:25226271..25226295 (25 bp)
TTTGATTGTCATTCCCTAGTTGATT
LOC_Os01g43480
Os.648.1.S1_at--1150--3011Chr01:25226307..25226331 (25 bp)
AATGCTGAACCTTCTTGATTCGGGA
LOC_Os01g43480
Target Sequence 
AAAGGCGATGCTGGAGAGACTACCCTGAGACCGCTAAACATGGAGGACTTGAGAAAGGCAAAGGATGAAGTCGCCGCTAG
CTTCGCTAGCGAAGGCGTTGTGATGAATCAGATCAAGGAATGGAATGAGCTCTACGGCAAAGGCGGGTCGAGGAAGCGGG
AGCAACTGACATACTTCTTGTAGTGAAGAATTCATTACTTGTATATACATTTGTAGTGTTTGTGGTTGGCATCTGGCCCC
CGGATGACTGGATGTACTGAAGCAGAGAAGAACATAGGGAAAAAAGAGGCATTTAGGAGTAGTAGTCGTCAGACCCGATA
ATTTGATTGTCATTCCCTAGTTGATTTATTGAATAATAATGCTGAACCTTCTTGATTCGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis