Browse Element(s) Details


Os.23622.1.A1_at

Description gb:CA760138
DB_XREF= gi:25804177
DB_XREF=BR060006B20A08.ab1
CLONE=BR060006B20A08.ab1
TID=Os.23622.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.23622 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_172218.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g435209/11ceramidase family protein, putative, expressed
LOC_Os02g058701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43470NANA1+25219023..25219610hypothetical protein
LOC_Os01g43480Os.648.1.S1_at11/111+25221554..25226354ATPase, AAA family protein, expressed
LOC_Os01g43490Os.32727.1.S1_at10/111+25226356..25228661Polygalacturonase precursor, putative, expressed
LOC_Os01g43500OsAffx.21341.1.S1_s_at11/111+25231167..25234607hypothetical protein
LOC_Os01g43500OsAffx.21341.2.S1_at10/111+25231167..25234607hypothetical protein
LOC_Os01g43510OsAffx.9111.2.S1_at11/111+25235591..25236542hypothetical protein
LOC_Os01g43520Os.652.1.S2_a_at11/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.652.1.S1_a_at11/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.23622.1.A1_at9/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.10728.1.S1_at1/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.55119.1.S1_at1/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43530NANA1+25259750..25260416Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os01g43540Os.9338.1.S1_at9/111+25264524..25269730SGS domain containing protein, expressed
LOC_Os01g43550Os.57382.1.S1_at11/111+25272130..25274142WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0017040molecular_functionceramidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23622.1.A1_at--34--931Chr01:25246149..25246173 (25 bp)
AGGCAGGCACATGTGGTACCTTTAT
LOC_Os01g43520
Os.23622.1.A1_at--635--6971Chr01:25246134..25246158 (25 bp)
GTACCTTTATATTTGAAACACCTAG
LOC_Os01g43520
Os.23622.1.A1_at--15--4311Chr01:25246114..25246138 (25 bp)
CCTAGTTCATTTACTCTTTGAGTTT
LOC_Os01g43520
Os.23622.1.A1_at--69--5131Chr01:25246084..25246108 (25 bp)
GCAAAGGTCGAAGGTGGCCATTATT
LOC_Os01g43520
Os.23622.1.A1_at--483--8811Chr01:25246049..25246073 (25 bp)
TGTTGCTGCATGAAATCAGTACTGC
LOC_Os01g43520
Os.23622.1.A1_at--909--2051NONE
ACATTGATGACTGGCAAATGCTCTA
NONE
Os.23622.1.A1_at--814--3431Chr02:2900128..2900305 (25 bp)
CAGTTTGTTTGACCTTTTCTGGAAT
LOC_Os02g05870
Os.23622.1.A1_at--594--9831Chr01:25245913..25245937 (25 bp)
TAAACCATAGCCAGTATCATGATAT
LOC_Os01g43520
Os.23622.1.A1_at--790--10431Chr01:25245888..25245912 (25 bp)
TTATGACCAGCATGATTTGTTGTGC
LOC_Os01g43520
Os.23622.1.A1_at--527--2991Chr01:25245841..25245865 (25 bp)
AATGAGTTGTCACTTCCAAACCCAG
LOC_Os01g43520
Os.23622.1.A1_at--979--2371Chr01:25245824..25245848 (25 bp)
AAACCCAGTCATGAGTGAGCTCCAT
LOC_Os01g43520
Target Sequence 
AGGCAGGCACATGTGGTACCTTTATATTTGAAACACCTAGTTCATTTACTCTTTGAGTTTTGATAGCAAAGGTCGAAGGT
GGCCATTATTATAGAGCAAATGTTGCTGCATGAAATCAGTACTGCAGGTACTGATATAACATATAATTCTTAGTAACATT
GATGACTGGCAAATGCTCTAATTCAATGATTCAGTTTGTTTGACCTTTTCTGGAATATTCAGATTGTTTCAAAGCTTAAA
CCATAGCCAGTATCATGATATTTATGACCAGCATGATTTGTTGTGCTAGAGGCAAAGCAATGACATCAAATGAGTTGTCA
CTTCCAAACCCAGTCATGAGTGAGCTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23622.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis