Browse Element(s) Details


Os.55119.1.S1_at

Description gb:AK107520.1
DB_XREF= gi:32992729
TID=Os.55119.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55119 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-F08, full insert sequence.
FL= gb:AK107520.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g435201/11ceramidase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43470NANA1+25219023..25219610hypothetical protein
LOC_Os01g43480Os.648.1.S1_at11/111+25221554..25226354ATPase, AAA family protein, expressed
LOC_Os01g43490Os.32727.1.S1_at10/111+25226356..25228661Polygalacturonase precursor, putative, expressed
LOC_Os01g43500OsAffx.21341.1.S1_s_at11/111+25231167..25234607hypothetical protein
LOC_Os01g43500OsAffx.21341.2.S1_at10/111+25231167..25234607hypothetical protein
LOC_Os01g43510OsAffx.9111.2.S1_at11/111+25235591..25236542hypothetical protein
LOC_Os01g43520Os.652.1.S2_a_at11/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.652.1.S1_a_at11/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.23622.1.A1_at9/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.10728.1.S1_at1/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.55119.1.S1_at1/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43530NANA1+25259750..25260416Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os01g43540Os.9338.1.S1_at9/111+25264524..25269730SGS domain containing protein, expressed
LOC_Os01g43550Os.57382.1.S1_at11/111+25272130..25274142WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0017040molecular_functionceramidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55119.1.S1_at--655--3991Chr04:27325654..27325678 (25 bp)
CGTGGCCGGTGGTCAATCCGCACCG
NONE
Os.55119.1.S1_at--625--3911Chr04:27325699..27325723 (25 bp)
CTGGCGCGTTTCAAGTTTCCTCGAC
NONE
Os.55119.1.S1_at--883--471Chr04:27325737..27325761 (25 bp)
ATCTGCACATCACGGTGCGGTTTTT
NONE
Os.55119.1.S1_at--809--9671Chr04:27325746..27325770 (25 bp)
TCACGGTGCGGTTTTTAATTTTGAT
NONE
Os.55119.1.S1_at--830--1691Chr04:27325939..27325963 (25 bp)
ACCACACATAGAGAAGTTCGGCCGT
NONE
Os.55119.1.S1_at--210--2012Chr12:26283079..26283098 (20 bp)
ACTAGAGCTAATGTGTTTAACGTCA
NONE
Os.55119.1.S1_at--68--7732Chr04:27326018..27326042 (25 bp)
GGTGGTCCAAATCGTAACAATAGCA
NONE
Os.55119.1.S1_at--292--3191Chr04:27326035..27326059 (25 bp)
CAATAGCAAATTTATTCGGTCTAAA
NONE
Os.55119.1.S1_at--778--2673Chr04:27326119..27326143 (25 bp)
AAGCGTAATTCACTCTTTTTGATAA
NONE
Os.55119.1.S1_at--827--5531Chr04:27326176..27326199 (24 bp)
GAAACAAGAACATATGCTGCCGCAT
NONE
Os.55119.1.S1_at--672--1431Chr04:27326181..27326205 (25 bp)
AGAACATATGCTGCCGCATACGTAT
NONE
Target Sequence 
CGTGGCCGGTGGTCAATCCGCACCGCCCCCCGCCGCGTTCTCCTCCTGGCGCGTTTCAAGTTTCCTCGACCCCCCCTCCC
CCCATCTGCACATCACGGTGCGGTTTTTAATTTTGATAGAGTAAATTGTACTTTTGGTTCACCTTTTATTACCCAAGTTT
TAATTTAGACCACCCTTAAATATATTTTTTAAATTTAGACCGGGTAAATTTACCATTGTTACGGTTTGGACTATTATGAA
CAACTTTTCTCGTCATGTCTAACTTCCCTTTCGGCAAACATATGAACCACACATAGAGAAGTTCGGCCGTATACTAGAGC
TAATGTGTTTAACGTCATTAATTGTACTTAAAAAAATTGTTCGTGGTGGTCCAAATCGTAACAATAGCAAATTTATTCGG
TCTAAAATGAAAAGATATGTTTAAGGGTGGTTCAAAGTAAAACTTAGGTAATAAAATGTGGTCCAAAGCGTAATTCACTC
TTTTTGATAAGAGTACTGTAGTAAGGTTTGGTTGGATTTCGGAAACAAGAACATATGCTGCCGCATACGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis