Browse Element(s) Details


OsAffx.9111.2.S1_at

Description tigr:9629.m04190
TID=OsAffx.9111.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4351011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43470NANA1+25219023..25219610hypothetical protein
LOC_Os01g43480Os.648.1.S1_at11/111+25221554..25226354ATPase, AAA family protein, expressed
LOC_Os01g43490Os.32727.1.S1_at10/111+25226356..25228661Polygalacturonase precursor, putative, expressed
LOC_Os01g43500OsAffx.21341.1.S1_s_at11/111+25231167..25234607hypothetical protein
LOC_Os01g43500OsAffx.21341.2.S1_at10/111+25231167..25234607hypothetical protein
LOC_Os01g43510OsAffx.9111.2.S1_at11/111+25235591..25236542hypothetical protein
LOC_Os01g43520Os.652.1.S2_a_at11/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.652.1.S1_a_at11/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.23622.1.A1_at9/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.10728.1.S1_at1/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.55119.1.S1_at1/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43530NANA1+25259750..25260416Late embryogenesis abundant protein Lea14-A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9111.2.S1_at--592--7191Chr01:25235857..25235881 (25 bp)
GTCGTACGAGGAGCGGGTCTTCTAC
LOC_Os01g43510
OsAffx.9111.2.S1_at--20--4991Chr01:25235929..25235953 (25 bp)
GCACCTCAAGTTCTGCGCGTCCGAG
LOC_Os01g43510
OsAffx.9111.2.S1_at--355--2691Chr01:25235996..25236020 (25 bp)
AAGCTGCGCACGCTCAGCTTCGGGT
LOC_Os01g43510
OsAffx.9111.2.S1_at--759--1551Chr01:25236053..25236077 (25 bp)
AGCTTCTCCAGGAGCTCCAACAGCG
LOC_Os01g43510
OsAffx.9111.2.S1_at--940--3971Chr01:25236158..25236182 (25 bp)
CGGGACGTGATCAGGCGGTACCTCA
LOC_Os01g43510
OsAffx.9111.2.S1_at--131--911Chr01:25236170..25236194 (25 bp)
AGGCGGTACCTCAGCAAGATCTCGA
LOC_Os01g43510
OsAffx.9111.2.S1_at--871--6411Chr01:25236187..25236211 (25 bp)
GATCTCGAGGCAACTGCGCCGGGTA
LOC_Os01g43510
OsAffx.9111.2.S1_at--893--531Chr01:25236347..25236371 (25 bp)
ATCGCGCACTGCAAGGAGTCGCTCC
LOC_Os01g43510
OsAffx.9111.2.S1_at--257--9011Chr01:25236356..25236377 (22 bp)
TGCAAGGAGTCGCTCCACCGTGCGT
LOC_Os01g43510
OsAffx.9111.2.S1_at--86--1791Chr01:25236372..25236502 (25 bp)
ACCGTGCGTCCATGTCAGAGTTCGA
LOC_Os01g43510
OsAffx.9111.2.S1_at--617--3511Chr01:25236488..25236512 (25 bp)
CATGTCAGAGTTCGACTCGCCATTG
LOC_Os01g43510
Target Sequence 
GTCGTACGAGGAGCGGGTCTTCTACGTTGGCGGCGGTAGTGGGTGGGCGCGCGCGGCGGCGGCGGCGCCCGCGCACCTCA
AGTTCTGCGCGTCCGAGCCGAGCGACGCCGCCTCGCGGTACGGCTCCGGCAGGCGCGGCAAGCTGCGCACGCTCAGCTTC
GGGTCCGCCAAGGCCGCGTTCTACGGCGGCCGCGCCAGCTTCTCCAGGAGCTCCAACAGCGCGCGCTCGGCCAGGCTCTT
CGCCGCGTTCGGCTACGGCTCGCCGGACCAGGGGGACGAGGCCAACAGGAGGACGCCCTCGCGGGACGTGATCAGGCGGT
ACCTCAGCAAGATCTCGAGGCAACTGCGCCGGGTAGCCCCCAGCGCCGGCGCGGACCTCCGGCTACGGAAGAGCCGGTCG
GCGTCCGCGGCGCAGACGGCGGCGTGCCAGTCGCCGCCGCCTCGCCGCGACGACTCGCTCCTCGAGCAGCAGGACGGCAT
CGCGAGCGCCATCGCGCACTGCAAGGAGTCGCTCCACCGTGCGTCCATGTCAGAGTTCGACTCGCCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9111.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis