Browse Element(s) Details


Os.9338.1.S1_at

Description gb:AF192467.1
DB_XREF= gi:6581057
GEN=Sgt1
TID=Os.9338.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9338 (NCBI UniGene Cluster)
DEF=Oryza sativa Sgt1 (Sgt1) mRNA, complete cds.
PROD=Sgt1
FL= gb:AF192467.1 gb:AK059268.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g435409/11SGS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43520Os.652.1.S2_a_at11/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.652.1.S1_a_at11/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.23622.1.A1_at9/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.10728.1.S1_at1/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.55119.1.S1_at1/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43530NANA1+25259750..25260416Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os01g43540Os.9338.1.S1_at9/111+25264524..25269730SGS domain containing protein, expressed
LOC_Os01g43550Os.57382.1.S1_at11/111+25272130..25274142WRKY DNA binding domain containing protein, expressed
LOC_Os01g43560OsAffx.11455.2.A1_at11/111+25278833..25279621hypothetical protein
LOC_Os01g43570OsAffx.21337.2.S1_s_at11/111+25282807..25283124hypothetical protein
LOC_Os01g43570OsAffx.21337.1.S1_x_at6/111+25282807..25283124hypothetical protein
LOC_Os01g43580Os.16303.3.S1_x_at10/111+25287927..25289674expressed protein
LOC_Os01g43590Os.40015.1.S1_at11/111+25294258..25295895HSF-type DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006913biological_processnucleocytoplasmic transport
GO:0009734biological_processauxin mediated signaling pathway
GO:0010017biological_processred or far red light signaling pathway
GO:0030163biological_processprotein catabolism
GO:0042831biological_processdefense response to pathogenic fungi
GO:0005634cellular_componentnucleus
GO:0005635cellular_componentnuclear envelope
GO:0005737cellular_componentcytoplasm
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0030176cellular_componentintegral to endoplasmic reticulum membrane
GO:0004721molecular_functionphosphoprotein phosphatase activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9338.1.S1_at--441--2871Chr01:25267844..25267868 (25 bp)
AAGTGTGTCGATTGAAGTCCCTGGA
LOC_Os01g43540
Os.9338.1.S1_at--316--6031Chr01:25267867..25267891 (25 bp)
GAGAGGAGCCGTACCATTTTCAGCC
LOC_Os01g43540
Os.9338.1.S1_at--760--3371Chr01:25267887..25267907 (21 bp)
CAGCCTCGTCTGTTTTCTAAGATCA
LOC_Os01g43540
Os.9338.1.S1_at--587--6471Chr01:25268234..25268258 (25 bp)
GATACCAAGTGCTATCCACGAAGGT
LOC_Os01g43540
Os.9338.1.S1_at--462--5491Chr01:25268281..25268305 (25 bp)
GAACAGATTACATGGACCTCACTTG
LOC_Os01g43540
Os.9338.1.S1_at--391--2811NONE
AAGATAATCCCTCCAGCTGAATCGG
NONE
Os.9338.1.S1_at--144--891Chr01:25268927..25268951 (25 bp)
AGGCCATCATATCCTTCCTCAAAAT
LOC_Os01g43540
Os.9338.1.S1_at--515--9811Chr01:25269324..25269348 (25 bp)
TAACGGTACTGTTCTGTCGACCAAT
LOC_Os01g43540
Os.9338.1.S1_at--629--7011Chr01:25269417..25269438 (22 bp)
GTACTAAGATCTCGGTTCGTGCCAT
LOC_Os01g43540
Os.9338.1.S1_at--1117--9411NONE
TCGTGCCATGCTGTAAATTCGTTAT
NONE
Os.9338.1.S1_at--905--10151Chr01:25269454..25269478 (25 bp)
TATCGTCGTGAGTCATCACTTGGCT
LOC_Os01g43540
Target Sequence 
AAGTGTGTCGATTGAAGTCCCTGGAGAGGAGCCGTACCATTTTCAGCCTCGTCTGTTTTCTAAGATCATCCCTGAGAAAA
GCAGATACCAAGTGCTATCCACGAAGGTTGAAATAAGACTGGCTAAAGCTGAACAGATTACATGGACCTCACTTGATTAT
GATAAAAAACCAAAGGCTGTTCCACAAAAGATAATCCCTCCAGCTGAATCGGCCCAGAGGCCATCATATCCTTCCTCAAA
ATCCAAGAAAGACTGGGATAAACTGGAAGCTGAAGTTAAAAAGGAGGAGAAGGAGGAGAAGCTTGAAGGCGATGCTGCAT
TGAACAAATTTTTCCGTGACATCTACAGTGATGCTGATGAAGACATGCGACGAGCAATGATGAAATCTTTTGTTGAATCT
AACGGTACTGTTCTGTCGACCAATTGGAAAGATGTTGGCTCGAAGAAGGTAGAGGGAAGCCCACCTGATGGGATGGAGCT
TAAGAAATGGGAGTACTAAGATCTCGGTTCGTGCCATGCTGTAAATTCGTTATCGTCGTGAGTCATCACTTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis