Browse Element(s) Details


OsAffx.21337.2.S1_s_at

Description tigr:9629.m04196
TID=OsAffx.21337.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4357011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43530NANA1+25259750..25260416Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os01g43540Os.9338.1.S1_at9/111+25264524..25269730SGS domain containing protein, expressed
LOC_Os01g43550Os.57382.1.S1_at11/111+25272130..25274142WRKY DNA binding domain containing protein, expressed
LOC_Os01g43560OsAffx.11455.2.A1_at11/111+25278833..25279621hypothetical protein
LOC_Os01g43570OsAffx.21337.2.S1_s_at11/111+25282807..25283124hypothetical protein
LOC_Os01g43570OsAffx.21337.1.S1_x_at6/111+25282807..25283124hypothetical protein
LOC_Os01g43580Os.16303.3.S1_x_at10/111+25287927..25289674expressed protein
LOC_Os01g43590Os.40015.1.S1_at11/111+25294258..25295895HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g43600OsAffx.23648.2.S1_at11/111+25302840..25304259hypothetical protein
LOC_Os01g43610Os.36376.1.S1_at11/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g43610Os.36376.2.S1_x_at6/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21337.2.S1_s_at--1022--4071Chr01:25282998..25283022 (25 bp)
CGAAGTGTAGCAGCAAGAGTAAGGA
LOC_Os01g43570
OsAffx.21337.2.S1_s_at--815--1471Chr01:25282987..25283011 (25 bp)
AGCAAGAGTAAGGAGGGCCGCCGCA
LOC_Os01g43570
OsAffx.21337.2.S1_s_at--447--4211Chr01:25282970..25282994 (25 bp)
CCGCCGCACAGGAGGAAGTCGCCTT
LOC_Os01g43570
OsAffx.21337.2.S1_s_at--654--3311Chr01:25282964..25282988 (25 bp)
CACAGGAGGAAGTCGCCTTCGTGGC
LOC_Os01g43570
OsAffx.21337.2.S1_s_at--578--8331Chr01:25282942..25282966 (25 bp)
GGCTGCCGCCACCAATCTAGAAGAA
LOC_Os01g43570
OsAffx.21337.2.S1_s_at--274--4531Chr01:25282938..25282962 (25 bp)
GCCGCCACCAATCTAGAAGAACTCA
LOC_Os01g43570
OsAffx.21337.2.S1_s_at--735--5371Chr01:25282923..25282947 (25 bp)
GAAGAACTCAATGGCACAGTGGAAG
LOC_Os01g43570
OsAffx.21337.2.S1_s_at--105--9691Chr01:25282916..25282940 (25 bp)
TCAATGGCACAGTGGAAGAGGTCGA
LOC_Os01g43570
OsAffx.21337.2.S1_s_at--1080--8011Chr01:25282885..25282909 (25 bp)
GGAGGAGCTTGTGGCGCCGGAAAAA
LOC_Os01g43570
OsAffx.21337.2.S1_s_at--643--5291Chr01:25282859..25282883 (25 bp)
GAAGGCGGTTGATGGCCAACGCCGA
LOC_Os01g43570
OsAffx.21337.2.S1_s_at--837--4351Chr01:25282844..25282868 (25 bp)
CCAACGCCGAGAAGGAAAGGCAACG
LOC_Os01g43570
Target Sequence 
CGAAGTGTAGCAGCAAGAGTAAGGAGGGCCGCCGCACAGGAGGAAGTCGCCTTCGTGGCTGCCGCCACCAATCTAGAAGA
ACTCAATGGCACAGTGGAAGAGGTCGACGGCGCGGAGGAGCTTGTGGCGCCGGAAAAAGGAAGGCGGTTGATGGCCAACG
CCGAGAAGGAAAGGCAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21337.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis