Browse Element(s) Details


OsAffx.23648.2.S1_at

Description tigr:9629.m04200
TID=OsAffx.23648.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4360011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43560OsAffx.11455.2.A1_at11/111+25278833..25279621hypothetical protein
LOC_Os01g43570OsAffx.21337.2.S1_s_at11/111+25282807..25283124hypothetical protein
LOC_Os01g43570OsAffx.21337.1.S1_x_at6/111+25282807..25283124hypothetical protein
LOC_Os01g43580Os.16303.3.S1_x_at10/111+25287927..25289674expressed protein
LOC_Os01g43590Os.40015.1.S1_at11/111+25294258..25295895HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g43600OsAffx.23648.2.S1_at11/111+25302840..25304259hypothetical protein
LOC_Os01g43610Os.36376.1.S1_at11/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g43610Os.36376.2.S1_x_at6/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g43620OsAffx.23649.2.S1_at10/111+25315123..25319617hypothetical protein
LOC_Os01g43630Os.24505.1.S1_at11/111+25321591..25329703adaptin family protein, putative, expressed
LOC_Os01g43630Os.7815.1.S1_at3/111+25321591..25329703adaptin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23648.2.S1_at--473--1511Chr01:25303850..25304159 (25 bp)
AGCAGCGCCTGATACAGGTTATCGT
LOC_Os01g43600
OsAffx.23648.2.S1_at--5--4171Chr01:25303845..25304154 (25 bp)
CGCCTGATACAGGTTATCGTGCCCA
LOC_Os01g43600
OsAffx.23648.2.S1_at--962--4431Chr01:25303797..25303821 (25 bp)
GCCTGCCTTCAGTACGGGAGGAGTT
LOC_Os01g43600
OsAffx.23648.2.S1_at--409--9431Chr01:25303773..25303797 (25 bp)
TCGTGGTGCAGTTCTCCTAGGCGCC
LOC_Os01g43600
OsAffx.23648.2.S1_at--610--9431Chr01:25303745..25303769 (25 bp)
TCGGTGGTCGGTGGGAGGAGCTCGC
LOC_Os01g43600
OsAffx.23648.2.S1_at--200--5911Chr01:25303728..25303752 (25 bp)
GAGCTCGCAGCGTGGGTCTCCGACA
LOC_Os01g43600
OsAffx.23648.2.S1_at--858--9351Chr01:25303724..25303748 (25 bp)
TCGCAGCGTGGGTCTCCGACAACCA
LOC_Os01g43600
OsAffx.23648.2.S1_at--183--2651Chr01:25303704..25303728 (25 bp)
AACCACCATGCCATCTGCAAAGGAG
LOC_Os01g43600
OsAffx.23648.2.S1_at--845--4331Chr01:25303699..25303723 (25 bp)
CCATGCCATCTGCAAAGGAGGAGGA
LOC_Os01g43600
OsAffx.23648.2.S1_at--555--1011Chr01:25302893..25302917 (25 bp)
AGGTTTCTGTTGGTGTTAGATCCAC
LOC_Os01g43600
OsAffx.23648.2.S1_at--37--6631Chr01:25302885..25302909 (25 bp)
GTTGGTGTTAGATCCACAAGTGCAA
LOC_Os01g43600
Target Sequence 
AGCAGCGCCTGATACAGGTTATCGTGCCCAGCATCCTCCAATACGTGTGCACCGCCTGCCTTCAGTACGGGAGGAGTTCG
TGGTGCAGTTCTCCTAGGCGCCCCGTCGGTGGTCGGTGGGAGGAGCTCGCAGCGTGGGTCTCCGACAACCACCATGCCAT
CTGCAAAGGAGGAGGAGGAGGACGAGGCGGCAAGGGGCACGACTCGAAGGCGATGTCAACACCCATCTTCTTCATCCCAG
ATGCTCCCTTCCATGCTCAGCTTGAGTTCAATCCGGGATTTCTCAGCTTCATGCGGTTCAGAGGGTTGCTATGGAGGTTT
CTGTTGGTGTTAGATCCACAAGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23648.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis