Browse Element(s) Details


OsAffx.23649.2.S1_at

Description tigr:9629.m04202
TID=OsAffx.23649.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4362010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43590Os.40015.1.S1_at11/111+25294258..25295895HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g43600OsAffx.23648.2.S1_at11/111+25302840..25304259hypothetical protein
LOC_Os01g43610Os.36376.1.S1_at11/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g43610Os.36376.2.S1_x_at6/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g43620OsAffx.23649.2.S1_at10/111+25315123..25319617hypothetical protein
LOC_Os01g43630Os.24505.1.S1_at11/111+25321591..25329703adaptin family protein, putative, expressed
LOC_Os01g43630Os.7815.1.S1_at3/111+25321591..25329703adaptin family protein, putative, expressed
LOC_Os01g43640Os.4996.1.S1_at3/111+25331219..25331461TOM7, putative
LOC_Os01g43650Os.30512.1.S1_at11/111+25336301..25339081WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23649.2.S1_at--21--8131NONE
GGACATTATTCACGCCAGCGCGTAC
NONE
OsAffx.23649.2.S1_at--314--3231Chr01:25315305..25315329 (25 bp)
CAAGTTGTGAATTCCAACGTGGTAT
LOC_Os01g43620
OsAffx.23649.2.S1_at--913--3251Chr01:25315291..25315315 (25 bp)
CAACGTGGTATACATGGAGCAGAAG
LOC_Os01g43620
OsAffx.23649.2.S1_at--481--1511Chr01:25315274..25315298 (25 bp)
AGCAGAAGTACGGAAGAGGGCCTCT
LOC_Os01g43620
OsAffx.23649.2.S1_at--801--7551Chr01:25315257..25315281 (25 bp)
GGGCCTCTGGGCGTTTATACAATCA
LOC_Os01g43620
OsAffx.23649.2.S1_at--520--7571Chr01:25315249..25315273 (25 bp)
GGGCGTTTATACAATCAAAGCTCAA
LOC_Os01g43620
OsAffx.23649.2.S1_at--432--5311Chr01:25315219..25315243 (25 bp)
GAAGGTGCGTTTTACGACTGCTCGC
LOC_Os01g43620
OsAffx.23649.2.S1_at--361--9951Chr01:25315207..25315231 (25 bp)
TACGACTGCTCGCAATCATGTCAGC
LOC_Os01g43620
OsAffx.23649.2.S1_at--531--3071Chr01:25315194..25315218 (25 bp)
AATCATGTCAGCCAGATCGCTCTTA
LOC_Os01g43620
OsAffx.23649.2.S1_at--756--531Chr01:25315179..25315203 (25 bp)
ATCGCTCTTATCTTTGTTCACATGC
LOC_Os01g43620
OsAffx.23649.2.S1_at--28--6751Chr01:25315164..25315188 (25 bp)
GTTCACATGCCAATGTCAGAAGCTA
LOC_Os01g43620
Target Sequence 
GGACATTATTCACGCCAGCGCGTACATTGGCCCCGTTCAGTTGTGTTTCCACGTGCATGGTACACCTGCCGGAATCGCAG
AGATATCTCTGCGTGACACTACTCTAGCTCCGATTGATGATCAAGACGTCAAGGGGCACTTTGGCTCAGGTGAAGAAGAG
ATTTTTAGAAGACAAGTTGTGAATTCCAACGTGGTATACATGGAGCAGAAGTACGGAAGAGGGCCTCTGGGCGTTTATAC
AATCAAAGCTCAAATTAAGAAGGTGCGTTTTACGACTGCTCGCAATCATGTCAGCCAGATCGCTCTTATCTTTGTTCACA
TGCCAATGTCAGAAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23649.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis