Browse Element(s) Details


Os.30512.1.S1_at

Description gb:AY341856.1
DB_XREF= gi:33519199
TID=Os.30512.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30512 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.
PROD=WRKY16
FL= gb:AY341856.1 gb:AK108745.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4365011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43620OsAffx.23649.2.S1_at10/111+25315123..25319617hypothetical protein
LOC_Os01g43630Os.24505.1.S1_at11/111+25321591..25329703adaptin family protein, putative, expressed
LOC_Os01g43630Os.7815.1.S1_at3/111+25321591..25329703adaptin family protein, putative, expressed
LOC_Os01g43640Os.4996.1.S1_at3/111+25331219..25331461TOM7, putative
LOC_Os01g43650Os.30512.1.S1_at11/111+25336301..25339081WRKY DNA binding domain containing protein, expressed
LOC_Os01g43660OsAffx.2228.1.S1_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43660OsAffx.2228.1.S1_x_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43670OsAffx.21333.1.S1_s_at11/111+25353635..25354923hypothetical protein
LOC_Os01g43680Os.763.1.S1_at11/111+25356661..25360088expressed protein
LOC_Os01g43680Os.763.2.S1_at11/111+25356661..25360088expressed protein
LOC_Os01g43680Os.763.2.S1_x_at11/111+25356661..25360088expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30512.1.S1_at--923--7891Chr01:25338381..25338405 (25 bp)
GGTTCCACCCTGAGCTGATGGGCCT
LOC_Os01g43650
Os.30512.1.S1_at--924--9871Chr01:25338448..25338472 (25 bp)
TAGCATGTACTTCCCGGGCGTAGCT
LOC_Os01g43650
Os.30512.1.S1_at--1043--1511Chr01:25338543..25338567 (25 bp)
AGCAGCATCACTTCACTGACTACGC
LOC_Os01g43650
Os.30512.1.S1_at--1039--8991Chr01:25338573..25338597 (25 bp)
TGCAAGACCTTTTCCCTTCCACAAT
LOC_Os01g43650
Os.30512.1.S1_at--761--5151Chr01:25338606..25338630 (25 bp)
GCAACCCATGATGATGACTGATCTA
LOC_Os01g43650
Os.30512.1.S1_at--646--5731Chr01:25338621..25338645 (25 bp)
GACTGATCTAACTGATTCTGCACAA
LOC_Os01g43650
Os.30512.1.S1_at--27--3751Chr01:25338656..25338680 (25 bp)
CTCAATATTTAACTAGCACCCGGAA
LOC_Os01g43650
Os.30512.1.S1_at--450--3711Chr01:25338668..25338692 (25 bp)
CTAGCACCCGGAATTTATCAAGATG
LOC_Os01g43650
Os.30512.1.S1_at--954--10311Chr01:25338695..25338719 (25 bp)
TTTCAAACATTGGAGTCGTTGCGCC
LOC_Os01g43650
Os.30512.1.S1_at--162--6091Chr01:25338707..25338731 (25 bp)
GAGTCGTTGCGCCAAAAATGTGATG
LOC_Os01g43650
Os.30512.1.S1_at--850--7311Chr01:25338740..25338764 (25 bp)
GTGCTTGATGATCAGCTTGGTCTTG
LOC_Os01g43650
Target Sequence 
GGTTCCACCCTGAGCTGATGGGCCTCATGCACCACCACCCGGCCATGGCCGCCGCCGCCGCAAACCCTAGCATGTACTTC
CCGGGCGTAGCTGCTTCTGCTCCGCCGCCTCCTGCTGTGGCTGGCGGCGGTGCAATGCCGCCCAACGATCATCCTCCTCT
TCAGCAGCATCACTTCACTGACTACGCCCTGCTGCAAGACCTTTTCCCTTCCACAATGCCCAGCAGCAACCCATGATGAT
GACTGATCTAACTGATTCTGCACAAATATATACTACTCAATATTTAACTAGCACCCGGAATTTATCAAGATGCTTTTCAA
ACATTGGAGTCGTTGCGCCAAAAATGTGATGGCTAGGGAGTGCTTGATGATCAGCTTGGTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis