Browse Element(s) Details


Os.763.1.S1_at

Description gb:AK071582.1
DB_XREF= gi:32981605
TID=Os.763.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.763 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0006C01.21 (P0006C01.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099H13, full insert sequence.
FL= gb:AK071582.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4368011/11expressed protein
LOC_Os12g163501/113-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43650Os.30512.1.S1_at11/111+25336301..25339081WRKY DNA binding domain containing protein, expressed
LOC_Os01g43660OsAffx.2228.1.S1_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43660OsAffx.2228.1.S1_x_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43670OsAffx.21333.1.S1_s_at11/111+25353635..25354923hypothetical protein
LOC_Os01g43680Os.763.1.S1_at11/111+25356661..25360088expressed protein
LOC_Os01g43680Os.763.2.S1_at11/111+25356661..25360088expressed protein
LOC_Os01g43680Os.763.2.S1_x_at11/111+25356661..25360088expressed protein
LOC_Os01g43690OsAffx.9109.1.S1_at10/111+25365314..25367008hypothetical protein
LOC_Os01g43700Os.767.1.S1_at11/111+25367617..25370751Cytochrome P450 family protein, expressed
LOC_Os01g43710Os.6452.1.S1_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43710Os.6452.2.A1_a_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43720Os.770.1.S1_at11/111+25382651..25384933Cytochrome P450 72A1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006574biological_processvaline catabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0008152biological_processmetabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0003700molecular_functiontranscription factor activity
GO:0003824molecular_functioncatalytic activity
GO:0003860molecular_function3-hydroxyisobutyryl-CoA hydrolase activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.763.1.S1_at--930--211Chr01:25357129..25357153 (25 bp)
ATATATGGTCTTTGGTAAGGCCCTT
LOC_Os01g43680
Os.763.1.S1_at--530--7831Chr01:25357116..25357140 (25 bp)
GGTAAGGCCCTTATCATCATTGTTA
LOC_Os01g43680
Os.763.1.S1_at--770--934Chr12:9359866..9359971 (25 bp)
AGGCAGCCAGCTTTTGCTTCTTTCT
LOC_Os12g16350
Os.763.1.S1_at--661--7931Chr01:25357003..25357027 (25 bp)
GGATTCTGATGCTTGATGTCTGGTA
LOC_Os01g43680
Os.763.1.S1_at--391--9471Chr01:25356985..25357009 (25 bp)
TCTGGTAGCATGGTGTTGCTGCGCT
LOC_Os01g43680
Os.763.1.S1_at--762--7531Chr01:25356934..25356958 (25 bp)
GTGGCACTATGGTTAGATCGTCAGA
LOC_Os01g43680
Os.763.1.S1_at--740--6331Chr01:25356896..25356920 (25 bp)
GATGCATTATGTTTTCAGGCTTACC
LOC_Os01g43680
Os.763.1.S1_at--701--4891Chr01:25356878..25356902 (25 bp)
GCTTACCTTTGCCTTTTGTGACTTA
LOC_Os01g43680
Os.763.1.S1_at--181--1591Chr01:25356845..25356869 (25 bp)
AGCTCTACCTATCCTATGGTCAGAT
LOC_Os01g43680
Os.763.1.S1_at--935--811Chr01:25356830..25356854 (25 bp)
ATGGTCAGATCACCGTGCTTTGCTC
LOC_Os01g43680
Os.763.1.S1_at--910--10271Chr01:25356812..25356836 (25 bp)
TTTGCTCTTTTTCAAGCTCTGCTTA
LOC_Os01g43680
Target Sequence 
ATATATGGTCTTTGGTAAGGCCCTTATCATCATTGTTACTTGATTGACTTTGTGTGGGTGTGGAAGGNAAGGCAGGCAGC
CAGCTTTTGCTTCTTTCTGCAGGCCTCAAAAGAGGTATTGTTTGTGGGATTCTGATGCTTGATGTCTGGTAGCATGGTGT
TGCTGCGCTGTGAGCTTTCCCTCCCTCATCATGGTGTGGCACTATGGTTAGATCGTCAGACGAAGTTCTGGATGATGCAT
TATGTTTTCAGGCTTACCTTTGCCTTTTGTGACTTAAGCNACCTCAGCTCTACCTATCCTATGGTCAGATCACCGTGCTT
TGCTCTTTTTCAAGCTCTGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.763.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis