Browse Element(s) Details


Os.763.2.S1_x_at

Description gb:NM_192894.1
DB_XREF= gi:34912871
GEN=P0006C01.20
TID=Os.763.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.763 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0006C01.21 (P0006C01.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0006C01.20 (P0006C01.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4368011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43650Os.30512.1.S1_at11/111+25336301..25339081WRKY DNA binding domain containing protein, expressed
LOC_Os01g43660OsAffx.2228.1.S1_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43660OsAffx.2228.1.S1_x_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43670OsAffx.21333.1.S1_s_at11/111+25353635..25354923hypothetical protein
LOC_Os01g43680Os.763.1.S1_at11/111+25356661..25360088expressed protein
LOC_Os01g43680Os.763.2.S1_at11/111+25356661..25360088expressed protein
LOC_Os01g43680Os.763.2.S1_x_at11/111+25356661..25360088expressed protein
LOC_Os01g43690OsAffx.9109.1.S1_at10/111+25365314..25367008hypothetical protein
LOC_Os01g43700Os.767.1.S1_at11/111+25367617..25370751Cytochrome P450 family protein, expressed
LOC_Os01g43710Os.6452.1.S1_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43710Os.6452.2.A1_a_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43720Os.770.1.S1_at11/111+25382651..25384933Cytochrome P450 72A1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.763.2.S1_x_at--150--7951Chr01:25357760..25357784 (25 bp)
GGATTTGAGTTTCAGCCTTCCAAGG
LOC_Os01g43680
Os.763.2.S1_x_at--871--4431Chr01:25357746..25357770 (25 bp)
GCCTTCCAAGGTATGCCCCAGAAAC
LOC_Os01g43680
Os.763.2.S1_x_at--13--2331Chr01:25357694..25357718 (25 bp)
AAAGGGCGCATCATGTGTCATCCTG
LOC_Os01g43680
Os.763.2.S1_x_at--44--4391Chr01:25357614..25357638 (25 bp)
GCCAATTTGCAGAAGTTCCGGCCAA
LOC_Os01g43680
Os.763.2.S1_x_at--583--6591Chr01:25357536..25357560 (25 bp)
GATTGATGCACTGCTAAGCTCTGAT
LOC_Os01g43680
Os.763.2.S1_x_at--1146--9271Chr01:25357470..25357494 (25 bp)
TCCGGACTGCTTCGAGAGTGATTCC
LOC_Os01g43680
Os.763.2.S1_x_at--926--6111Chr01:25357455..25357479 (25 bp)
GAGTGATTCCCTTGATTCATCTTCA
LOC_Os01g43680
Os.763.2.S1_x_at--837--3011Chr01:25357413..25357437 (25 bp)
AATGCATCATTCTTCTAGCCAGAGT
LOC_Os01g43680
Os.763.2.S1_x_at--496--3432Chr09:12991862..12991901 (24 bp)
CAGAGTTCAGTCTTCCATGGATCCA
NONE
Os.763.2.S1_x_at--78--8571Chr01:25357377..25357401 (25 bp)
TGGATCCATGGACACTGTTACTCAT
LOC_Os01g43680
Os.763.2.S1_x_at--150--6011Chr01:25357303..25357327 (25 bp)
GAGACCAATTGGATACAGCCTCTGT
LOC_Os01g43680
Target Sequence 
GGATTTGAGTTTCAGCCTTCCAAGGTATGCCCCAGAAACTTCATCATCTTTGATCAAACTGATGACAAAGGGCGCATCAT
GTGTCATCCTGCATTGGTGAGCAAGCTAAACCCTTCAGCCACCAATGCTTTCCCTTCCTATCCCGAGCCAATTTGCAGAA
GTTCCGGCCAAGATAACGGAAACCTGGAAGAAGTTTCCTCATCTTTCAAGGAGGATACAAGAGAGATTGATGCACTGCTA
AGCTCTGATGAAGAAAGCGATGAAGATGATGTCAAGAGTACTGGGCGTACTCCGGACTGCTTCGAGAGTGATTCCCTTGA
TTCATCTTCACCACCAAGGTCTAGGAAAATGCATCATTCTTCTAGCCAGAGTTCAGTCTTCCATGGATCCATGGACACTG
TTACTCATGAGAGGATGAGAAATATGGTCACAGTTCTTAGGGGAATAATCCCTGGTGGAGACCAATTGGATACAGCCTCT
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.763.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis