Browse Element(s) Details


OsAffx.9109.1.S1_at

Description tigr:9629.m04209
TID=OsAffx.9109.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4369010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43660OsAffx.2228.1.S1_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43660OsAffx.2228.1.S1_x_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43670OsAffx.21333.1.S1_s_at11/111+25353635..25354923hypothetical protein
LOC_Os01g43680Os.763.1.S1_at11/111+25356661..25360088expressed protein
LOC_Os01g43680Os.763.2.S1_at11/111+25356661..25360088expressed protein
LOC_Os01g43680Os.763.2.S1_x_at11/111+25356661..25360088expressed protein
LOC_Os01g43690OsAffx.9109.1.S1_at10/111+25365314..25367008hypothetical protein
LOC_Os01g43700Os.767.1.S1_at11/111+25367617..25370751Cytochrome P450 family protein, expressed
LOC_Os01g43710Os.6452.1.S1_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43710Os.6452.2.A1_a_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43720Os.770.1.S1_at11/111+25382651..25384933Cytochrome P450 72A1, putative, expressed
LOC_Os01g43729OsAffx.21330.1.S1_at11/111+25385567..25386223NA
LOC_Os01g43740Os.33102.1.S1_at11/111+25387612..25390410Cytochrome P450 family protein, expressed
LOC_Os01g43740Os.33102.2.S1_at11/111+25387612..25390410Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9109.1.S1_at--671--7491Chr01:25366898..25366922 (25 bp)
GTGGTACACGACTGGCGCTTTGAAT
LOC_Os01g43690
OsAffx.9109.1.S1_at--1110--8751Chr01:25366862..25366886 (25 bp)
TGTATGGTTGCAAATCCCGGAGATA
LOC_Os01g43690
OsAffx.9109.1.S1_at--551--731Chr01:25366778..25366802 (25 bp)
ATGTTCAGTCATCAGTGGGCCTGGA
LOC_Os01g43690
OsAffx.9109.1.S1_at--327--2411Chr01:25366729..25366753 (25 bp)
AAACACCCCATGTTGATGCACACAG
LOC_Os01g43690
OsAffx.9109.1.S1_at--361--6331Chr01:25366715..25366739 (25 bp)
GATGCACACAGGCTATAACCAACGA
LOC_Os01g43690
OsAffx.9109.1.S1_at--575--1691Chr01:25366698..25366722 (25 bp)
ACCAACGAGGCCCATGGATGCGTAA
LOC_Os01g43690
OsAffx.9109.1.S1_at--201--2911Chr01:25366016..25366039 (24 bp)
AAGGTATCAACTTTGGCTCCTGACA
LOC_Os01g43690
OsAffx.9109.1.S1_at--253--8491Chr01:25366003..25366027 (25 bp)
TGGCTCCTGACAAGCGTGGTGATCA
LOC_Os01g43690
OsAffx.9109.1.S1_at--846--631NONE
ATGCATGTTTTCAACGTTTCGCGGG
NONE
OsAffx.9109.1.S1_at--129--391Chr01:25365380..25365404 (25 bp)
ATCAGAGCACCCCAAAGCATCTTTA
LOC_Os01g43690
OsAffx.9109.1.S1_at--148--9551Chr01:25365361..25365385 (25 bp)
TCTTTACCAGTAATCAGGCCTCCAA
LOC_Os01g43690
Target Sequence 
GTGGTACACGACTGGCGCTTTGAATGGAGGAGAGGATGTATGGTTGCAAATCCCGGAGATACCGCACCGCGCGATAGGGC
CGGAGGAAGGAGAAGCTGATCCAAAGACAGACCCCCCAAAATGTTCAGTCATCAGTGGGCCTGGAACGGAAAACATCTTC
CGGCCCATCAAACACCCCATGTTGATGCACACAGGCTATAACCAACGAGGCCCATGGATGCGTAAGGTATCAACTTTGGC
TCCTGACAAGCGTGGTGATCAGATACGGACATGCGGTAGGCATGAGATAATGCATGTTTTCAACGTTTCGCGGGGTTCCA
AATTAATCAATGATAGCGTGAACCGATCAGAGCACCCCAAAGCATCTTTACCAGTAATCAGGCCTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis