Browse Element(s) Details


OsAffx.21330.1.S1_at

Description gb:NM_192903.1
DB_XREF= gi:34912889
GEN=P0006C01.29
TID=OsAffx.21330.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0006C01.29 (P0006C01.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4372911/11
LOC_Os11g283901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43690OsAffx.9109.1.S1_at10/111+25365314..25367008hypothetical protein
LOC_Os01g43700Os.767.1.S1_at11/111+25367617..25370751Cytochrome P450 family protein, expressed
LOC_Os01g43710Os.6452.1.S1_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43710Os.6452.2.A1_a_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43720Os.770.1.S1_at11/111+25382651..25384933Cytochrome P450 72A1, putative, expressed
LOC_Os01g43729OsAffx.21330.1.S1_at11/111+25385567..25386223NA
LOC_Os01g43740Os.33102.1.S1_at11/111+25387612..25390410Cytochrome P450 family protein, expressed
LOC_Os01g43740Os.33102.2.S1_at11/111+25387612..25390410Cytochrome P450 family protein, expressed
LOC_Os01g43750Os.773.1.S1_s_at11/111+25393101..25395128Cytochrome P450 family protein, expressed
LOC_Os01g43760Os.21332.1.S1_at9/111+25397564..25399553Cytochrome P450 family protein, expressed
LOC_Os01g43760Os.26891.1.A1_x_at1/111+25397564..25399553Cytochrome P450 family protein, expressed
LOC_Os01g43774Os.41199.1.A1_at11/111+25400697..25405220Cytochrome P450 family protein, expressed
LOC_Os01g43774Os.56112.1.A1_at11/111+25400697..25405220Cytochrome P450 family protein, expressed
LOC_Os01g43774OsAffx.23650.1.S1_at9/111+25400697..25405220Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21330.1.S1_at--208--4571Chr01:25386065..25386189 (25 bp)
GCGCGCTCGCCTGTGGAGTGCTACA
LOC_Os01g43729
OsAffx.21330.1.S1_at--760--8552Chr12:1331195..1331491 (25 bp)
TGGAGTGCTACATCATCGCCACGTA
NONE
OsAffx.21330.1.S1_at--565--1131Chr01:25386049..25386073 (25 bp)
AGTGCTACATCATCGCCACGTAGGA
LOC_Os01g43729
OsAffx.21330.1.S1_at--378--9873Chr11:15840548..15840571 (24 bp)
TACATCATCGCCACGTAGGACGAGG
LOC_Os11g28390
OsAffx.21330.1.S1_at--985--9311Chr01:25386037..25386061 (25 bp)
TCGCCACGTAGGACGAGGACCAACT
LOC_Os01g43729
OsAffx.21330.1.S1_at--192--6931Chr01:25386030..25386054 (25 bp)
GTAGGACGAGGACCAACTCAAACCA
LOC_Os01g43729
OsAffx.21330.1.S1_at--1127--6171Chr01:25386023..25386047 (25 bp)
GAGGACCAACTCAAACCAGCCACAT
LOC_Os01g43729
OsAffx.21330.1.S1_at--621--3252Chr09:2507495..2507514 (20 bp)
CAACTCAAACCAGCCACATAGATGT
NONE
OsAffx.21330.1.S1_at--45--2371Chr01:25386011..25386035 (25 bp)
AAACCAGCCACATAGATGTCACGTC
LOC_Os01g43729
OsAffx.21330.1.S1_at--1026--4392Chr02:27830120..27830185 (25 bp)
GCCACATAGATGTCACGTCAGCTAA
NONE
OsAffx.21330.1.S1_at--814--272Chr01:16095344..16095363 (20 bp)
ATAGATGTCACGTCAGCTAAAATCG
NONE
Target Sequence 
GCGCGCTCGCCTGTGGAGTGCTACATCATCGCCACGTAGGACGAGGACCAACTCAAACCAGCCACATAGATGTCACGTCA
GCTAAAATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis