Browse Element(s) Details


OsAffx.23650.1.S1_at

Description tigr:9629.m04217
TID=OsAffx.23650.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g437749/11Cytochrome P450 family protein, expressed
LOC_Os04g251001/11transposon protein, putative, unclassified
LOC_Os09g232301/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43710Os.6452.1.S1_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43710Os.6452.2.A1_a_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43720Os.770.1.S1_at11/111+25382651..25384933Cytochrome P450 72A1, putative, expressed
LOC_Os01g43729OsAffx.21330.1.S1_at11/111+25385567..25386223NA
LOC_Os01g43740Os.33102.1.S1_at11/111+25387612..25390410Cytochrome P450 family protein, expressed
LOC_Os01g43740Os.33102.2.S1_at11/111+25387612..25390410Cytochrome P450 family protein, expressed
LOC_Os01g43750Os.773.1.S1_s_at11/111+25393101..25395128Cytochrome P450 family protein, expressed
LOC_Os01g43760Os.21332.1.S1_at9/111+25397564..25399553Cytochrome P450 family protein, expressed
LOC_Os01g43760Os.26891.1.A1_x_at1/111+25397564..25399553Cytochrome P450 family protein, expressed
LOC_Os01g43774Os.41199.1.A1_at11/111+25400697..25405220Cytochrome P450 family protein, expressed
LOC_Os01g43774Os.56112.1.A1_at11/111+25400697..25405220Cytochrome P450 family protein, expressed
LOC_Os01g43774OsAffx.23650.1.S1_at9/111+25400697..25405220Cytochrome P450 family protein, expressed
LOC_Os01g43790NANA1+25421128..25421442transposon protein, putative, unclassified
LOC_Os01g43800NANA1+25427849..25433238retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23650.1.S1_at--15--7133Chr09:13788756..13788775 (20 bp)
GTCATTAGCATGACATCTTCTGGTT
LOC_Os09g23230
OsAffx.23650.1.S1_at--920--1491NONE
AGCATGACATCTTCTGGTTTACCTG
NONE
OsAffx.23650.1.S1_at--61--5671NONE
GACATCTTCTGGTTTACCTGTTGAA
NONE
OsAffx.23650.1.S1_at--1016--3591Chr01:25401632..25401651 (20 bp)
CTTCTGGTTTACCTGTTGAAAGCAG
LOC_Os01g43774
OsAffx.23650.1.S1_at--80--5611Chr01:25401654..25401678 (25 bp)
GATTAAAAGTTTGGGCGTTCGTCAG
LOC_Os01g43774
OsAffx.23650.1.S1_at--335--2331Chr01:25401659..25401683 (25 bp)
AAAGTTTGGGCGTTCGTCAGCGACG
LOC_Os01g43774
OsAffx.23650.1.S1_at--1155--10611Chr01:25401671..25401695 (25 bp)
TTCGTCAGCGACGTGCGAGGGCATT
LOC_Os01g43774
OsAffx.23650.1.S1_at--719--1071Chr01:25401688..25401712 (25 bp)
AGGGCATTGGGCATCGGCGTCCCCT
LOC_Os01g43774
OsAffx.23650.1.S1_at--164--8371Chr01:25401703..25401727 (25 bp)
GGCGTCCCCTGCTCAGTCGTGGAGC
LOC_Os01g43774
OsAffx.23650.1.S1_at--1020--5031Chr01:25401726..25401750 (25 bp)
GCAGAGGATGGCGTTGTCCCCTGCT
LOC_Os01g43774
OsAffx.23650.1.S1_at--983--9411Chr01:25401920..25401944 (25 bp)
TCGGGAGTCGGCCACTCGGGAGGGT
LOC_Os01g43774
Target Sequence 
GTCATTAGCATGACATCTTCTGGTTTACCTGTTGAAAGCAGGAGATTAAAAGTTTGGGCGTTCGTCAGCGACGTGCGAGG
GCATTGGGCATCGGCGTCCCCTGCTCAGTCGTGGAGCAGAGGATGGCGTTGTCCCCTGCTCCCCGCCGCCGCCACCTCCC
CTGCCGCTCATCTCGCCCCGGCCGCCGCCGGTGGCGCTTCCCTCCTACGCGACTCGCCGGCCGGGGCCGAGCGGGAGGCG
CCGCTGGCGGCGGCGGCGGCGGCGGCGGGGAGGGGCGTCGGGAGGGTGGGGCGCCGGCGAGGAGGTGCGTCGGGAGTCGG
CCACTCGGGAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis