Browse Element(s) Details


Os.33102.2.S1_at

Description gb:NM_192904.1
DB_XREF= gi:34912891
GEN=P0006C01.30
TID=Os.33102.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33102 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative cytochrome P450 (P0006C01.30), mRNA.
PROD=putative cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4374011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43690OsAffx.9109.1.S1_at10/111+25365314..25367008hypothetical protein
LOC_Os01g43700Os.767.1.S1_at11/111+25367617..25370751Cytochrome P450 family protein, expressed
LOC_Os01g43710Os.6452.1.S1_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43710Os.6452.2.A1_a_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43720Os.770.1.S1_at11/111+25382651..25384933Cytochrome P450 72A1, putative, expressed
LOC_Os01g43729OsAffx.21330.1.S1_at11/111+25385567..25386223NA
LOC_Os01g43740Os.33102.1.S1_at11/111+25387612..25390410Cytochrome P450 family protein, expressed
LOC_Os01g43740Os.33102.2.S1_at11/111+25387612..25390410Cytochrome P450 family protein, expressed
LOC_Os01g43750Os.773.1.S1_s_at11/111+25393101..25395128Cytochrome P450 family protein, expressed
LOC_Os01g43760Os.21332.1.S1_at9/111+25397564..25399553Cytochrome P450 family protein, expressed
LOC_Os01g43760Os.26891.1.A1_x_at1/111+25397564..25399553Cytochrome P450 family protein, expressed
LOC_Os01g43774Os.41199.1.A1_at11/111+25400697..25405220Cytochrome P450 family protein, expressed
LOC_Os01g43774Os.56112.1.A1_at11/111+25400697..25405220Cytochrome P450 family protein, expressed
LOC_Os01g43774OsAffx.23650.1.S1_at9/111+25400697..25405220Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33102.2.S1_at--368--5711Chr01:25389583..25389607 (25 bp)
GACTGAAAACGGCAAGTGCTTGTCA
LOC_Os01g43740
Os.33102.2.S1_at--973--8211Chr01:25389593..25389617 (25 bp)
GGCAAGTGCTTGTCAAAACCTGAAC
LOC_Os01g43740
Os.33102.2.S1_at--1100--2411Chr01:25389607..25389631 (25 bp)
AAAACCTGAACATATTTCTTCATCC
LOC_Os01g43740
Os.33102.2.S1_at--430--10571Chr01:25389622..25389646 (25 bp)
TTCTTCATCCATATTTGATCACAAG
LOC_Os01g43740
Os.33102.2.S1_at--90--8851Chr01:25389637..25389661 (25 bp)
TGATCACAAGTGGTAGTACACATGT
LOC_Os01g43740
Os.33102.2.S1_at--736--7031Chr01:25389652..25389676 (25 bp)
GTACACATGTTAACTTGCTCACGAT
LOC_Os01g43740
Os.33102.2.S1_at--953--731Chr01:25389658..25389682 (25 bp)
ATGTTAACTTGCTCACGATGCCTAG
LOC_Os01g43740
Os.33102.2.S1_at--883--2511Chr01:25389663..25389687 (25 bp)
AACTTGCTCACGATGCCTAGATACT
LOC_Os01g43740
Os.33102.2.S1_at--598--4831Chr01:25389668..25389692 (25 bp)
GCTCACGATGCCTAGATACTCTGTT
LOC_Os01g43740
Os.33102.2.S1_at--1155--6471Chr01:25389682..25389706 (25 bp)
GATACTCTGTTTATCTTTTGCAGGT
LOC_Os01g43740
Os.33102.2.S1_at--949--3871Chr01:25389688..25389712 (25 bp)
CTGTTTATCTTTTGCAGGTGACGAT
LOC_Os01g43740
Target Sequence 
GACTGAAAACGGCAAGTGCTTGTCAAAACCTGAACATATTTCTTCATCCATATTTGATCACAAGTGGTAGTACACATGTT
AACTTGCTCACGATGCCTAGATACTCTGTTTATCTTTTGCAGGTGACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33102.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis