Browse Element(s) Details


Os.6452.1.S1_at

Description gb:AK105255.1
DB_XREF= gi:32990464
TID=Os.6452.1
CNT=41
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6452 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (P0006C01.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-F02, full insert sequence.
FL= gb:AB047400.1 gb:AK105255.1 gb:AK101545.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4371011/11Cytochrome P450 72A1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43660OsAffx.2228.1.S1_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43660OsAffx.2228.1.S1_x_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43670OsAffx.21333.1.S1_s_at11/111+25353635..25354923hypothetical protein
LOC_Os01g43680Os.763.1.S1_at11/111+25356661..25360088expressed protein
LOC_Os01g43680Os.763.2.S1_at11/111+25356661..25360088expressed protein
LOC_Os01g43680Os.763.2.S1_x_at11/111+25356661..25360088expressed protein
LOC_Os01g43690OsAffx.9109.1.S1_at10/111+25365314..25367008hypothetical protein
LOC_Os01g43700Os.767.1.S1_at11/111+25367617..25370751Cytochrome P450 family protein, expressed
LOC_Os01g43710Os.6452.1.S1_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43710Os.6452.2.A1_a_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43720Os.770.1.S1_at11/111+25382651..25384933Cytochrome P450 72A1, putative, expressed
LOC_Os01g43729OsAffx.21330.1.S1_at11/111+25385567..25386223NA
LOC_Os01g43740Os.33102.1.S1_at11/111+25387612..25390410Cytochrome P450 family protein, expressed
LOC_Os01g43740Os.33102.2.S1_at11/111+25387612..25390410Cytochrome P450 family protein, expressed
LOC_Os01g43750Os.773.1.S1_s_at11/111+25393101..25395128Cytochrome P450 family protein, expressed
LOC_Os01g43760Os.21332.1.S1_at9/111+25397564..25399553Cytochrome P450 family protein, expressed
LOC_Os01g43760Os.26891.1.A1_x_at1/111+25397564..25399553Cytochrome P450 family protein, expressed
LOC_Os01g43774Os.41199.1.A1_at11/111+25400697..25405220Cytochrome P450 family protein, expressed
LOC_Os01g43774Os.56112.1.A1_at11/111+25400697..25405220Cytochrome P450 family protein, expressed
LOC_Os01g43774OsAffx.23650.1.S1_at9/111+25400697..25405220Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6452.1.S1_at--1104--9711Chr01:25372438..25372462 (25 bp)
TAATACCTTTTGATACCTCTCGAAA
LOC_Os01g43710
Os.6452.1.S1_at--359--1371Chr01:25372356..25372380 (25 bp)
AGAGCAGGTCTTCTAGGCACCGGCA
LOC_Os01g43710
Os.6452.1.S1_at--228--1011Chr01:25372319..25372343 (25 bp)
AGGATTTCCACCAAATCTGCGGTTC
LOC_Os01g43710
Os.6452.1.S1_at--851--4711Chr01:25372243..25372267 (25 bp)
GCTGGGCTTCGACAGACGACTCAAA
LOC_Os01g43710
Os.6452.1.S1_at--1100--4051Chr01:25372214..25372238 (25 bp)
CGAGTGTTTCGGTCTTTCAAGGTCA
LOC_Os01g43710
Os.6452.1.S1_at--690--2531Chr01:25372186..25372210 (25 bp)
AACTACCGAGACTACGAGCTGATCA
LOC_Os01g43710
Os.6452.1.S1_at--404--5891Chr01:25372171..25372195 (25 bp)
GAGCTGATCATTGTTCGTTACCCAT
LOC_Os01g43710
Os.6452.1.S1_at--150--10431Chr01:25372132..25372156 (25 bp)
TTATCAGCTGTAGGGCAGGCTCCTC
LOC_Os01g43710
Os.6452.1.S1_at--681--4791Chr01:25372114..25372138 (25 bp)
GCTCCTCTCTTATGGCCAATAACAT
LOC_Os01g43710
Os.6452.1.S1_at--414--2792Chr09:6574244..6574264 (21 bp)
AAGAGTTTGCATCTCGCTGGTGCAT
NONE
Os.6452.1.S1_at--892--7311Chr01:25372069..25372093 (25 bp)
GTGCATTATTGTACACCGTTCCCAC
LOC_Os01g43710
Target Sequence 
TAATACCTTTTGATACCTCTCGAAAACAGTAAAATATATCACAACACAATCATTACATAGTGACACCAGCCATTGTGAAA
ACAGAGCAGGTCTTCTAGGCACCGGCAGGTACGTCCCACAGGATTTCCACCAAATCTGCGGTTCGCAAGAACAAAACCCC
TTCTTTGTGATTGCTTCAAGTCTTCAACCAACTCCGCTGGGCTTCGACAGACGACTCAAAGGTGCGAGTGTTTCGGTCTT
TCAAGGTCATCCAACTACCGAGACTACGAGCTGATCATTGTTCGTTACCCATTGTAATGACACAGCTTATCAGCTGTAGG
GCAGGCTCCTCTCTTATGGCCAATAACATGAAGAGTTTGCATCTCGCTGGTGCATTATTGTACACCGTTCCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6452.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis