Browse Element(s) Details


OsAffx.21333.1.S1_s_at

Description gb:NM_192893.1
DB_XREF= gi:34912869
GEN=P0006C01.19
TID=OsAffx.21333.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0006C01.19 (P0006C01.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4367011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43630Os.24505.1.S1_at11/111+25321591..25329703adaptin family protein, putative, expressed
LOC_Os01g43630Os.7815.1.S1_at3/111+25321591..25329703adaptin family protein, putative, expressed
LOC_Os01g43640Os.4996.1.S1_at3/111+25331219..25331461TOM7, putative
LOC_Os01g43650Os.30512.1.S1_at11/111+25336301..25339081WRKY DNA binding domain containing protein, expressed
LOC_Os01g43660OsAffx.2228.1.S1_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43660OsAffx.2228.1.S1_x_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43670OsAffx.21333.1.S1_s_at11/111+25353635..25354923hypothetical protein
LOC_Os01g43680Os.763.1.S1_at11/111+25356661..25360088expressed protein
LOC_Os01g43680Os.763.2.S1_at11/111+25356661..25360088expressed protein
LOC_Os01g43680Os.763.2.S1_x_at11/111+25356661..25360088expressed protein
LOC_Os01g43690OsAffx.9109.1.S1_at10/111+25365314..25367008hypothetical protein
LOC_Os01g43700Os.767.1.S1_at11/111+25367617..25370751Cytochrome P450 family protein, expressed
LOC_Os01g43710Os.6452.1.S1_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43710Os.6452.2.A1_a_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21333.1.S1_s_at--1063--8551Chr01:25353769..25353793 (25 bp)
TGGATCTCGACCACCATGCCAAGCA
LOC_Os01g43670
OsAffx.21333.1.S1_s_at--473--1751Chr01:25353793..25353817 (25 bp)
ACCTCCTCGCGAGCCATATGGATTG
LOC_Os01g43670
OsAffx.21333.1.S1_s_at--280--9271Chr01:25353796..25353820 (25 bp)
TCCTCGCGAGCCATATGGATTGCAT
LOC_Os01g43670
OsAffx.21333.1.S1_s_at--1108--9311Chr01:25353799..25353823 (25 bp)
TCGCGAGCCATATGGATTGCATGCT
LOC_Os01g43670
OsAffx.21333.1.S1_s_at--969--5851Chr01:25353803..25353827 (25 bp)
GAGCCATATGGATTGCATGCTGCAA
LOC_Os01g43670
OsAffx.21333.1.S1_s_at--863--4431Chr01:25353805..25353829 (25 bp)
GCCATATGGATTGCATGCTGCAAGA
LOC_Os01g43670
OsAffx.21333.1.S1_s_at--339--3531Chr01:25353818..25353842 (25 bp)
CATGCTGCAAGAGTGATGGTGTCCA
LOC_Os01g43670
OsAffx.21333.1.S1_s_at--634--4531Chr01:25353892..25353916 (25 bp)
GCCCGCTGCCGGAGACAAGAGACTC
LOC_Os01g43670
OsAffx.21333.1.S1_s_at--230--9191Chr01:25353898..25353922 (25 bp)
TGCCGGAGACAAGAGACTCCCCGTG
LOC_Os01g43670
OsAffx.21333.1.S1_s_at--541--5971Chr01:25353903..25353927 (25 bp)
GAGACAAGAGACTCCCCGTGGTGGT
LOC_Os01g43670
OsAffx.21333.1.S1_s_at--408--1411Chr01:25353904..25353928 (25 bp)
AGACAAGAGACTCCCCGTGGTGGTC
LOC_Os01g43670
Target Sequence 
TGGATCTCGACCACCATGCCAAGCACCTCCTCGCGAGCCATATGGATTGCATGCTGCAAGAGTGATGGTGTCCAGGGACG
TGCACCTCTCCGCCTCCTCCTTCGTGCGGCTCTACCTCCCGCCGCCCGCTGCCGGAGACAAGAGACTCCCCGTGGTGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21333.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis