Browse Element(s) Details


Os.7815.1.S1_at

Description gb:AK061897.1
DB_XREF= gi:32971915
TID=Os.7815.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7815 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) beta-adaptin-like protein A (P0006C01.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G12, full insert sequence.
FL= gb:AK061897.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g436303/11adaptin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43600OsAffx.23648.2.S1_at11/111+25302840..25304259hypothetical protein
LOC_Os01g43610Os.36376.1.S1_at11/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g43610Os.36376.2.S1_x_at6/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g43620OsAffx.23649.2.S1_at10/111+25315123..25319617hypothetical protein
LOC_Os01g43630Os.24505.1.S1_at11/111+25321591..25329703adaptin family protein, putative, expressed
LOC_Os01g43630Os.7815.1.S1_at3/111+25321591..25329703adaptin family protein, putative, expressed
LOC_Os01g43640Os.4996.1.S1_at3/111+25331219..25331461TOM7, putative
LOC_Os01g43650Os.30512.1.S1_at11/111+25336301..25339081WRKY DNA binding domain containing protein, expressed
LOC_Os01g43660OsAffx.2228.1.S1_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43660OsAffx.2228.1.S1_x_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43670OsAffx.21333.1.S1_s_at11/111+25353635..25354923hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030276molecular_functionclathrin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7815.1.S1_at--1161--5271Chr01:25329581..25329605 (25 bp)
GAATGTATCGTCAACACAGCATCAG
LOC_Os01g43630
Os.7815.1.S1_at--197--5031Chr01:25329647..25329671 (25 bp)
GCAGAGGCATTTTCAACGTTGTTTC
LOC_Os01g43630
Os.7815.1.S1_at--1144--2571Chr01:25329661..25329685 (25 bp)
AACGTTGTTTCAGTCAGCTTTGTCC
LOC_Os01g43630
Os.7815.1.S1_at--957--2231Chr01:25329686..25329710 (25 bp)
AAATTTGGGCTTTCTTGATCCTGAG
NONE
Os.7815.1.S1_at--194--231Chr01:25329717..25329741 (25 bp)
ATATTGGTGATGAGCCTGTCAGTTT
NONE
Os.7815.1.S1_at--299--9851Chr01:25329754..25329778 (25 bp)
TACCACATCCTTGAACGTCCTAAAG
NONE
Os.7815.1.S1_at--318--1551Chr01:25329908..25329932 (25 bp)
AGCATTGTCGTATATTTCATCTGGA
NONE
Os.7815.1.S1_at--172--5291Chr01:25329970..25329994 (25 bp)
GAATGTCACCTGTTTTGTCGATGTA
NONE
Os.7815.1.S1_at--948--1651Chr01:25330011..25330035 (25 bp)
AGCGCTGCTTCTGTATGTTAGTACT
NONE
Os.7815.1.S1_at--963--1991Chr01:25330033..25330057 (25 bp)
ACTCCGTATTTCTTACTTGCACAGA
NONE
Os.7815.1.S1_at--383--1111Chr01:25330088..25330112 (25 bp)
AGTGACACATATTAAGCCCCTTTAC
NONE
Target Sequence 
GAATGTATCGTCAACACAGCATCAGCGAAGGCACAGATCAAAGTGAAGGCTGATGATGGGACCGCTGCAGAGGCATTTTC
AACGTTGTTTCAGTCAGCTTTGTCCAAATTTGGGCTTTCTTGATCCTGAGCATTTTATATTGGTGATGAGCCTGTCAGTT
TCTCTGCTTGTCCTACCACATCCTTGAACGTCCTAAAGATTTTTGGTACATCTTTAATGGGAATGTTGAAGCATGAGTTT
GAACATCCTCAACAGCATATACAGCAGGGAGAGCACAGGCTGGAGTTTTTTAAGGATGTATTTATGGTGGCTCGGTGGAG
AAAAATTAGCATTGTCGTATATTTCATCTGGAGAAGTGAGTTGTTGTGGCTTCTTGTGTTTCTGAAGGTGAATGTCACCT
GTTTTGTCGATGTAGAGACNATATAGATACAGCGCTGCTTCTGTATGTTAGTACTCCGTATTTCTTACTTGCACAGAGCA
ATAAAGCTGTTCATTCTACCAATATGAAGTGACACATATTAAGCCCCTTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis