Browse Element(s) Details


Os.24505.1.S1_at

Description gb:AK066892.1
DB_XREF= gi:32976910
TID=Os.24505.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24505 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088A19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088A19, full insert sequence.
FL= gb:AK066892.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4363011/11adaptin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43600OsAffx.23648.2.S1_at11/111+25302840..25304259hypothetical protein
LOC_Os01g43610Os.36376.1.S1_at11/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g43610Os.36376.2.S1_x_at6/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g43620OsAffx.23649.2.S1_at10/111+25315123..25319617hypothetical protein
LOC_Os01g43630Os.24505.1.S1_at11/111+25321591..25329703adaptin family protein, putative, expressed
LOC_Os01g43630Os.7815.1.S1_at3/111+25321591..25329703adaptin family protein, putative, expressed
LOC_Os01g43640Os.4996.1.S1_at3/111+25331219..25331461TOM7, putative
LOC_Os01g43650Os.30512.1.S1_at11/111+25336301..25339081WRKY DNA binding domain containing protein, expressed
LOC_Os01g43660OsAffx.2228.1.S1_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43660OsAffx.2228.1.S1_x_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43670OsAffx.21333.1.S1_s_at11/111+25353635..25354923hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030276molecular_functionclathrin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24505.1.S1_at--562--2151Chr01:25324121..25324145 (25 bp)
ACAGCATTTTGCTTGTACCCTTGGG
LOC_Os01g43630
Os.24505.1.S1_at--349--6811Chr01:25324151..25324175 (25 bp)
GTTTTCTCACAATGCCTTCAACAGT
LOC_Os01g43630
Os.24505.1.S1_at--260--1411Chr01:25324291..25324315 (25 bp)
AGACATCTCAATTTTGCCATTTATG
LOC_Os01g43630
Os.24505.1.S1_at--1004--9731Chr01:25324337..25324361 (25 bp)
TAATTCTTTTTGTTCCACGAGTAAT
LOC_Os01g43630
Os.24505.1.S1_at--597--1191Chr01:25324394..25324418 (25 bp)
AGTAGGTGTTGAACTGCCCAGGTGT
LOC_Os01g43630
Os.24505.1.S1_at--173--2551Chr01:25324405..25324429 (25 bp)
AACTGCCCAGGTGTTTGGCTTGCTA
LOC_Os01g43630
Os.24505.1.S1_at--204--8291Chr01:25324421..25324445 (25 bp)
GGCTTGCTAGTTTGCTGGCCAACAG
LOC_Os01g43630
Os.24505.1.S1_at--590--8451Chr01:25324437..25324461 (25 bp)
GGCCAACAGCTGGTTCACTATTTAA
LOC_Os01g43630
Os.24505.1.S1_at--229--2271Chr01:25324460..25324484 (25 bp)
AAATCGGTCATTGGTGGTCAAGTGA
LOC_Os01g43630
Os.24505.1.S1_at--222--831Chr01:25324549..25324573 (25 bp)
ATGGTTGGCAACTTCCACAGCTCCT
LOC_Os01g43630
Os.24505.1.S1_at--372--7791Chr01:25324578..25324602 (25 bp)
GGTCGGACCTCTTGGTATACTAGCA
LOC_Os01g43630
Target Sequence 
ACAGCATTTTGCTTGTACCCTTGGGTTCTTGTTTTCTCACAATGCCTTCAACAGTATNATACAACATAATAGGTTTACAT
AGTGTTCACTAGCCAAACTAGATAGGGTACTTCAGAGATAGTATTTACCAAGAATTATATTGCAGTTTTTTAGTTATATT
TAATGTTTAAAGACATCTCAATTTTGCCATTTATGATTTATCACTAGAACATATTGTAATTCTTTTTGTTCCACGAGTAA
TATTGGTGTTCTACCCAAAGTAATTGAAACCACAGTAGGTGTTGAACTGCCCAGGTGTTTGGCTTGCTAGTTTGCTGGCC
AACAGCTGGTTCACTATTTAAATCGGTCATTGGTGGTCAAGTGAGTGGTAAACTCATGTTATATATAATACTAATAGGAG
AGTAGCCAGGAGCCCAGGACAATAAGCNATGGTTGGCAACTTCCACAGCTCCTAGGTGGTCGGACCTCTTGGTATACTAG
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24505.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis