Browse Element(s) Details


Os.33102.1.S1_at

Description gb:AK101750.1
DB_XREF= gi:32986959
TID=Os.33102.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33102 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (P0006C01.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033063B21, full insert sequence.
FL= gb:AK101750.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4374011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43690OsAffx.9109.1.S1_at10/111+25365314..25367008hypothetical protein
LOC_Os01g43700Os.767.1.S1_at11/111+25367617..25370751Cytochrome P450 family protein, expressed
LOC_Os01g43710Os.6452.1.S1_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43710Os.6452.2.A1_a_at11/111+25372041..25376261Cytochrome P450 72A1, putative, expressed
LOC_Os01g43720Os.770.1.S1_at11/111+25382651..25384933Cytochrome P450 72A1, putative, expressed
LOC_Os01g43729OsAffx.21330.1.S1_at11/111+25385567..25386223NA
LOC_Os01g43740Os.33102.1.S1_at11/111+25387612..25390410Cytochrome P450 family protein, expressed
LOC_Os01g43740Os.33102.2.S1_at11/111+25387612..25390410Cytochrome P450 family protein, expressed
LOC_Os01g43750Os.773.1.S1_s_at11/111+25393101..25395128Cytochrome P450 family protein, expressed
LOC_Os01g43760Os.21332.1.S1_at9/111+25397564..25399553Cytochrome P450 family protein, expressed
LOC_Os01g43760Os.26891.1.A1_x_at1/111+25397564..25399553Cytochrome P450 family protein, expressed
LOC_Os01g43774Os.41199.1.A1_at11/111+25400697..25405220Cytochrome P450 family protein, expressed
LOC_Os01g43774Os.56112.1.A1_at11/111+25400697..25405220Cytochrome P450 family protein, expressed
LOC_Os01g43774OsAffx.23650.1.S1_at9/111+25400697..25405220Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33102.1.S1_at--927--2751Chr01:25390124..25390148 (25 bp)
AAGACTATGATCATCTGGTTTTGGT
LOC_Os01g43740
Os.33102.1.S1_at--1150--471Chr01:25390136..25390160 (25 bp)
ATCTGGTTTTGGTAGCAGCGGCCAC
LOC_Os01g43740
Os.33102.1.S1_at--176--4371Chr01:25390157..25390181 (25 bp)
CCACCCGTGAATCCGCTTATATATA
LOC_Os01g43740
Os.33102.1.S1_at--507--7131Chr01:25390187..25390211 (25 bp)
GTCATTTTCGATTTTCCATAGGCTA
LOC_Os01g43740
Os.33102.1.S1_at--252--10091Chr01:25390205..25390229 (25 bp)
TAGGCTAATATATGGATCGACACAG
LOC_Os01g43740
Os.33102.1.S1_at--590--7971Chr01:25390218..25390242 (25 bp)
GGATCGACACAGAAAAATGGTTCAC
LOC_Os01g43740
Os.33102.1.S1_at--333--7891Chr01:25390236..25390260 (25 bp)
GGTTCACAATAATCACATACATTAG
LOC_Os01g43740
Os.33102.1.S1_at--422--1191Chr01:25390259..25390283 (25 bp)
AGTATGTAACTAGGTGCACGTATGT
LOC_Os01g43740
Os.33102.1.S1_at--664--7771Chr01:25390271..25390295 (25 bp)
GGTGCACGTATGTTGACACGGTATA
LOC_Os01g43740
Os.33102.1.S1_at--355--1931Chr01:25390288..25390312 (25 bp)
ACGGTATAGTATGTGTGGATGTCAG
LOC_Os01g43740
Os.33102.1.S1_at--1016--2511Chr01:25390316..25390340 (25 bp)
AACTTGTACGTGCTGATGAGCGTGA
LOC_Os01g43740
Target Sequence 
AAGACTATGATCATCTGGTTTTGGTAGCAGCGGCCACCCGTGAATCCGCTTATATATATATATGTCATTTTCGATTTTCC
ATAGGCTAATATATGGATCGACACAGAAAAATGGTTCACAATAATCACATACATTAGTATGTAACTAGGTGCACGTATGT
TGACACGGTATAGTATGTGTGGATGTCAGGGGAACTTGTACGTGCTGATGAGCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis