Browse Element(s) Details


Os.16303.3.S1_x_at

Description gb:BM421916
DB_XREF= gi:18388718
DB_XREF=V021G12
CLONE=V021G12
TID=Os.16303.3
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.16303 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) kinesin-like protein (P0006C01.8), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4358010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43540Os.9338.1.S1_at9/111+25264524..25269730SGS domain containing protein, expressed
LOC_Os01g43550Os.57382.1.S1_at11/111+25272130..25274142WRKY DNA binding domain containing protein, expressed
LOC_Os01g43560OsAffx.11455.2.A1_at11/111+25278833..25279621hypothetical protein
LOC_Os01g43570OsAffx.21337.2.S1_s_at11/111+25282807..25283124hypothetical protein
LOC_Os01g43570OsAffx.21337.1.S1_x_at6/111+25282807..25283124hypothetical protein
LOC_Os01g43580Os.16303.3.S1_x_at10/111+25287927..25289674expressed protein
LOC_Os01g43590Os.40015.1.S1_at11/111+25294258..25295895HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g43600OsAffx.23648.2.S1_at11/111+25302840..25304259hypothetical protein
LOC_Os01g43610Os.36376.1.S1_at11/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g43610Os.36376.2.S1_x_at6/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16303.3.S1_x_at--46--5571Chr01:25289152..25289176 (25 bp)
GAAAGCTGCCGGAATTGTCGACTTA
LOC_Os01g43580
Os.16303.3.S1_x_at--186--51Chr01:25289165..25289189 (25 bp)
ATTGTCGACTTACAGGCACGTCTTG
LOC_Os01g43580
Os.16303.3.S1_x_at--1112--4111Chr01:25289190..25289214 (25 bp)
CGCAGTTCCAGAGGCGCTTAAACGA
LOC_Os01g43580
Os.16303.3.S1_x_at--1088--2971Chr01:25289219..25289243 (25 bp)
AATGTGCTGCTATATGCCCAATGCC
LOC_Os01g43580
Os.16303.3.S1_x_at--203--611NONE
ATGCCCAATGCCCTTGATCATAGGA
NONE
Os.16303.3.S1_x_at--480--6851Chr01:25289374..25289398 (25 bp)
GTTTGCTGGTATGCTCCGTAGAGAT
LOC_Os01g43580
Os.16303.3.S1_x_at--1125--10031Chr01:25289392..25289416 (25 bp)
TAGAGATGCGGCCTTGCCTGGCCAA
LOC_Os01g43580
Os.16303.3.S1_x_at--680--6771Chr01:25289543..25289567 (25 bp)
GTTACATCCTTGTGTATATCGTGCA
LOC_Os01g43580
Os.16303.3.S1_x_at--139--6891Chr01:25289556..25289580 (25 bp)
GTATATCGTGCAAATCGTGTCGTCA
LOC_Os01g43580
Os.16303.3.S1_x_at--166--3051Chr01:25289568..25289592 (25 bp)
AATCGTGTCGTCACAGGATTGTCCT
LOC_Os01g43580
Os.16303.3.S1_x_at--1134--7911Chr01:25289583..25289607 (25 bp)
GGATTGTCCTGTTATTTGTTGCTCA
LOC_Os01g43580
Target Sequence 
GAAAGCTGCCGGAATTGTCGACTTACAGGCACGTCTTGCGCAGTTCCAGAGGCGCTTAAACGAGAATAATGTGCTGCTAT
ATGCCCAATGCCCTTGATCATAGGAANTACCTATTTGTGATGAGAATAACGTGCAGTATATCNTGTANTACCAGAGCCCN
TTGATCAGAGGNAGTTGCCTATTTGTCNTTCACTNANCGAGGCTAATCAGAAAAGTTGGCTGTGNCCANCNTGTTTGCTG
GTATGCTCCGTAGAGATGCGGCCTTGCCTGGCCAANTACAGCTNCAGTTCAGAACCCANTAGACGCNAAGACANNNCGCA
GAACTAGATGGCTAGTTTACNTGCACNTTTGGGATCGGCCGACTTCGTAAGCNTATTTGTACCCGAGTTGCGNCCAGTNT
GTGTCCNTTCTGTTACATCCTTGTGTATATCGTGCAAATCGTGTCGTCACAGGATTGTCCTGTTATTTGTTGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16303.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis