Browse Element(s) Details


OsAffx.31217.1.S1_at

Description tigr:9639.m02716
TID=OsAffx.31217.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable (S)-acetone-cyanohydrin lyase - Arabidopsis thaliana (fragment)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3003011/11Esterase PIR7A, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30000Os.46012.2.S1_x_at7/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000Os.27088.1.A1_x_at4/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000Os.46012.3.S1_x_at3/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.19145.1.S1_x_at2/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.30217.1.S1_x_at2/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000Os.54691.1.S1_x_at1/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.10222.1.S1_x_at1/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.19145.1.S1_at1/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30010NANA11+16950641..16952484NB-ARC domain containing protein
LOC_Os11g30020OsAffx.19542.3.S1_x_at4/1111+16953790..16961390retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g30020Os.32727.1.S1_at1/1111+16953790..16961390retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g30030OsAffx.31217.1.S1_at11/1111+16967881..16968544Esterase PIR7A, putative
LOC_Os11g30040OsAffx.19078.1.S1_at11/1111+16969668..16970509esterase PIR7B, putative
LOC_Os11g30040OsAffx.22604.1.S1_x_at2/1111+16969668..16970509esterase PIR7B, putative
LOC_Os11g30050OsAffx.7253.1.S1_at11/1111+16976719..16980538NB-ARC domain containing protein
LOC_Os11g30060OsAffx.7254.1.S1_at11/1111+16982135..16986830NB-ARC domain containing protein
LOC_Os11g30070NANA11+16992638..16995970transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31217.1.S1_at--624--8591Chr11:16967992..16968016 (25 bp)
TGGTACAGGGTGACCACCGCGCTCT
LOC_Os11g30030
OsAffx.31217.1.S1_at--127--6151Chr11:16968085..16968109 (25 bp)
GAGGTGCCGTCCTTCGAGCGGTACA
LOC_Os11g30030
OsAffx.31217.1.S1_at--1162--9091Chr11:16968119..16968143 (25 bp)
TGCTCGACGCGGTAGCCGATCAGGA
LOC_Os11g30030
OsAffx.31217.1.S1_at--85--4351Chr11:16968203..16968227 (25 bp)
CCATGGAGAGGCACCCGGAGAAGAT
LOC_Os11g30030
OsAffx.31217.1.S1_at--1112--5171Chr11:16968269..16968293 (25 bp)
GCAAGTCCATGTCGTTCGCATTTAA
LOC_Os11g30030
OsAffx.31217.1.S1_at--408--6711Chr11:16968282..16968388 (25 bp)
GTTCGCATTTAAGCAGCTATCGCAA
LOC_Os11g30030
OsAffx.31217.1.S1_at--291--2911Chr11:16968392..16968416 (25 bp)
AAGGATGCAGATTTCTTCATGGATT
LOC_Os11g30030
OsAffx.31217.1.S1_at--497--7931Chr11:16968412..16968436 (25 bp)
GGATTGCACGATCCGAACCATCGGT
LOC_Os11g30030
OsAffx.31217.1.S1_at--776--9431Chr11:16968432..16968456 (25 bp)
TCGGTGATCCCCAGAATCCTGACAA
LOC_Os11g30030
OsAffx.31217.1.S1_at--123--8971Chr11:16968451..16968475 (25 bp)
TGACAAGACGTTTCTGTTCGGACCA
LOC_Os11g30030
OsAffx.31217.1.S1_at--911--6711Chr11:16968466..16968490 (25 bp)
GTTCGGACCAGAGTACTTGGCACTG
LOC_Os11g30030
Target Sequence 
TGGTACAGGGTGACCACCGCGCTCTCCTCCGCCGGCCACCGCGTCACCGCGCTCGACATGGCCGCCTGCGGCGCGCGCCC
GGGCCGCGCCGACGAGGTGCCGTCCTTCGAGCGGTACACCGCGCCGCTGCTCGACGCGGTAGCCGATCAGGACGGTGAGG
AGAAGGCGGTCGTCGTCGCGCACAGCTTCGGCGGGCAGAGCCTCGCGCTGGCCATGGAGAGGCACCCGGAGAAGATCGCC
GTCGCCGTGTTCGTCACCGCCACCATGCCCGCCGCCGGCAAGTCCATGTCGTTCGCATTTAAGCAGCTATCGCAAGGGAA
GGATGCAGATTTCTTCATGGATTGCACGATCCGAACCATCGGTGATCCCCAGAATCCTGACAAGACGTTTCTGTTCGGAC
CAGAGTACTTGGCACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis