Browse Element(s) Details


OsAffx.19145.1.S1_x_at

Description tigr:9639.m03039
TID=OsAffx.19145.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3337011/11hypothetical protein
LOC_Os11g300002/11retrotransposon protein, putative, unclassified
LOC_Os12g309802/11hypothetical protein
LOC_Os10g396901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33340Os.25454.1.S1_at11/1111+19221535..19232912metallopeptidase family M24 containing protein, expressed
LOC_Os11g33340Os.51301.1.S1_x_at3/1111+19221535..19232912metallopeptidase family M24 containing protein, expressed
LOC_Os11g33349NANA11+19234418..19234807NA
LOC_Os11g33360OsAffx.19144.1.S1_at10/1111+19240933..19242597hypothetical protein
LOC_Os11g33370OsAffx.19145.1.S1_at11/1111+19247328..19248530hypothetical protein
LOC_Os11g33370OsAffx.19145.1.S1_x_at11/1111+19247328..19248530hypothetical protein
LOC_Os11g33380OsAffx.31282.1.S1_at11/1111+19252472..19252690expressed protein
LOC_Os11g33380OsAffx.31282.1.S1_x_at11/1111+19252472..19252690expressed protein
LOC_Os11g33394Os.35907.1.S1_at11/1111+19255049..19261086expressed protein
LOC_Os11g33394OsAffx.31283.1.S1_at9/1111+19255049..19261086expressed protein
LOC_Os11g33410OsAffx.31284.1.S1_at11/1111+19270802..19271786hypothetical protein
LOC_Os11g33410OsAffx.19224.1.S1_at1/1111+19270802..19271786hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19145.1.S1_x_at--561--798Chr11:20408735..20408822 (25 bp)
ATGGGTTTTCCATGGGTCACATGGT
NONE
OsAffx.19145.1.S1_x_at--247--3512Chr11:19248326..19248350 (25 bp)
CATGGGTCACATGGTTCCAGAACAA
LOC_Os11g33370
OsAffx.19145.1.S1_x_at--527--6691Chr11:19248313..19248337 (25 bp)
GTTCCAGAACAATTGCCATGGGTCA
LOC_Os11g33370
OsAffx.19145.1.S1_x_at--424--2753Chr11:19247967..19247990 (24 bp)
AAGAACAATTTCCATAGGTCACATG
LOC_Os11g33370
OsAffx.19145.1.S1_x_at--647--3572Chr11:19247955..19247979 (25 bp)
CATAGGTCACATGGTGGAGAGGCCA
LOC_Os11g33370
OsAffx.19145.1.S1_x_at--59--10234Chr11:19248259..19248283 (25 bp)
TTTGGAACCCAGAACAATTTCAACA
LOC_Os11g33370
OsAffx.19145.1.S1_x_at--462--6851Chr11:19247800..19247824 (25 bp)
GTTTGGAATGGTGGGCCGTGGGTCA
LOC_Os11g33370
OsAffx.19145.1.S1_x_at--709--6451Chr11:19247643..19247667 (25 bp)
GATAACAAAGGGTCACATGGTGGAG
LOC_Os11g33370
OsAffx.19145.1.S1_x_at--155--29327Chr12:16157007..16157027 (21 bp)
AAGGACAATTTCCATGGGTCACATG
NONE
OsAffx.19145.1.S1_x_at--716--7095Chr11:19248292..19248316 (25 bp)
GTCACATGGTGGAGAGGCCAGATAA
LOC_Os11g33370
OsAffx.19145.1.S1_x_at--544--5871Chr11:19247360..19247384 (25 bp)
GAGCCTGAGGCCGATAACAAGTCTA
LOC_Os11g33370
Target Sequence 
ATGGGTTTTCCATGGGTCACATGGTTCCAGAACAATTGCCATGGGTCACATGGTGGAGAGGCCAGATAAAACAAAGGTTT
GGAACCCAGAACAATTTCAACAAAGAACAATTTCCATAGGTCACATGGTGGAGAGGCCAGATAAAACAAAGGTTTGGAAC
CCAGAACAATTTCAACAAAGGTTTGGAATGGAGATTGTTGGTTTGGAATGGTGGGCCGTGGGTCACATGGTGAAGAGGCC
AGATAACAAAGATAACAAAGGTTTGGAATGGTGGGTTAAGGAGATTGTTGGGCCGTGGGTCACATGGTGGTGGGTTAAGG
AGATTGTTGGGCCGTGGGTCACATGGTGGAGAGGCCAGATAACAAAGGGTCACATGGTGGAGAGGCCAGATAACAAAGGA
CAATTTCCATGGGTCACATGGTGGAGAGGCCAGATAACAAAGGTTTGGAATGGTGGGTTAAGGAGATTGTTGGGCCTGAG
GCCGGTAACAAGTCTTCGGGGGTCACATGGGGTTAATGTGACGGGGGAGATTGTTGAGCCTGAGGCCGATAACAAGTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19145.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis