Browse Element(s) Details


Os.25454.1.S1_at

Description gb:AK102913.1
DB_XREF= gi:32988122
TID=Os.25454.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25454 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033113M01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033113M01, full insert sequence.
FL= gb:AK102913.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3334011/11metallopeptidase family M24 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33310OsAffx.7285.1.S1_at10/1111+19199709..19201822F-box domain containing protein
LOC_Os11g33310OsAffx.24652.1.S1_x_at1/1111+19199709..19201822F-box domain containing protein
LOC_Os11g33320Os.22939.1.A1_at4/1111+19205395..19207533F-box domain containing protein, expressed
LOC_Os11g33330Os.7486.1.S1_at11/1111+19208196..19216868metallopeptidase family M24 containing protein, expressed
LOC_Os11g33330Os.51301.1.S1_x_at5/1111+19208196..19216868metallopeptidase family M24 containing protein, expressed
LOC_Os11g33340Os.25454.1.S1_at11/1111+19221535..19232912metallopeptidase family M24 containing protein, expressed
LOC_Os11g33340Os.51301.1.S1_x_at3/1111+19221535..19232912metallopeptidase family M24 containing protein, expressed
LOC_Os11g33349NANA11+19234418..19234807NA
LOC_Os11g33360OsAffx.19144.1.S1_at10/1111+19240933..19242597hypothetical protein
LOC_Os11g33370OsAffx.19145.1.S1_at11/1111+19247328..19248530hypothetical protein
LOC_Os11g33370OsAffx.19145.1.S1_x_at11/1111+19247328..19248530hypothetical protein
LOC_Os11g33380OsAffx.31282.1.S1_at11/1111+19252472..19252690expressed protein
LOC_Os11g33380OsAffx.31282.1.S1_x_at11/1111+19252472..19252690expressed protein
LOC_Os11g33394Os.35907.1.S1_at11/1111+19255049..19261086expressed protein
LOC_Os11g33394OsAffx.31283.1.S1_at9/1111+19255049..19261086expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009926biological_processauxin polar transport
GO:0005886cellular_componentplasma membrane
GO:0004177molecular_functionaminopeptidase activity
GO:0009983molecular_functiontyrosine aminopeptidase activity
GO:0010013molecular_functionN-1-naphthylphthalamic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25454.1.S1_at--309--6551Chr11:19222098..19222122 (25 bp)
GATTTTGCAGCCTTACCTGAATGAG
LOC_Os11g33340
Os.25454.1.S1_at--217--7391Chr11:19222031..19222055 (25 bp)
GTGAGCTGTTAAGCCATCGACTACA
LOC_Os11g33340
Os.25454.1.S1_at--1058--831Chr11:19221999..19222023 (25 bp)
ATGGCACAGGGTCTCAACCAGTTGC
LOC_Os11g33340
Os.25454.1.S1_at--928--1711Chr11:19221983..19222007 (25 bp)
ACCAGTTGCAGCCATTCGTGCTAGA
LOC_Os11g33340
Os.25454.1.S1_at--244--591Chr11:19221931..19221955 (25 bp)
ATGCCATGCTTTGCCTTGGGTTGAA
LOC_Os11g33340
Os.25454.1.S1_at--307--10091Chr11:19221884..19221908 (25 bp)
TAGGACTAGAGGACTGGCCGCTTAC
LOC_Os11g33340
Os.25454.1.S1_at--374--10471Chr11:19221863..19221887 (25 bp)
TTACCTAGTCCCTACCATGAATATG
LOC_Os11g33340
Os.25454.1.S1_at--259--3691Chr11:19221716..19221740 (25 bp)
CTAGTTGTGTTTGTACGGTTCTCCA
LOC_Os11g33340
Os.25454.1.S1_at--1074--7891Chr11:19221700..19221724 (25 bp)
GGTTCTCCAGACGTTGCTTGAATGC
LOC_Os11g33340
Os.25454.1.S1_at--36--2251Chr11:19221586..19221610 (25 bp)
AAATTGTATCTCACATCAACCCTGC
LOC_Os11g33340
Os.25454.1.S1_at--943--4851Chr11:19221555..19221579 (25 bp)
GCTTTGAAACTGAGCGACGCCGGTA
LOC_Os11g33340
Target Sequence 
GATTTTGCAGCCTTACCTGAATGAGCAGGAGAAGGAATGGCTGAGGAAAGCTACTGAGCCTATTACTGTGAGCTGTTAAG
CCATCGACTACATGAGCACATGGCACAGGGTCTCAACCAGTTGCAGCCATTCGTGCTAGATGTGCAGAAGTGCAGATGGT
TTCTGACATGCCATGCTTTGCCTTGGGTTGAATGCGAAGATATGGAAGTAGAAATAGGACTAGAGGACTGGCCGCTTACC
TAGTCCCTACCATGAATATGGGCTGTGTTTGAATCCAAACTTCAGTCCTTTTCCATCACATCAACTTGTCATACACATAC
AACTTCTCAGTCACATCATCTTCAATTCCAACTAAAATTCAAACTTTACGCTGAACTAAACACTAGTTGTGTTTGTACGG
TTCTCCAGACGTTGCTTGAATGCCTTGTGGGCATTTGTATCGTGATGTATCGAGCGGCGAGTAATTGCAGTGTAATAATA
AGCGGCCATGTCTGGTGATAAGCTGTTGTTTAAAATTGTATCTCACATCAACCCTGCCTCACGGCTTTGAAACTGAGCGA
CGCCGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis