Browse Element(s) Details


Os.22939.1.A1_at

Description gb:CA754179
DB_XREF= gi:25798218
DB_XREF=BR040011000_PLATE_A11_81_084.ab1
CLONE=BR040011000_PLATE_A11_81_084.ab1
TID=Os.22939.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.22939 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g333204/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33280Os.32823.2.S1_s_at4/1111+19177456..19182280hypothetical protein
LOC_Os11g33290Os.35344.3.S1_x_at9/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.2.S1_s_at8/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290Os.35344.18.S1_x_at8/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.3.S1_x_at6/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.5.S1_x_at4/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.1.S1_s_at2/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33300OsAffx.19143.1.S1_at11/1111+19193297..19194862O-methyltransferase family protein
LOC_Os11g33310OsAffx.7285.1.S1_at10/1111+19199709..19201822F-box domain containing protein
LOC_Os11g33310OsAffx.24652.1.S1_x_at1/1111+19199709..19201822F-box domain containing protein
LOC_Os11g33320Os.22939.1.A1_at4/1111+19205395..19207533F-box domain containing protein, expressed
LOC_Os11g33330Os.7486.1.S1_at11/1111+19208196..19216868metallopeptidase family M24 containing protein, expressed
LOC_Os11g33330Os.51301.1.S1_x_at5/1111+19208196..19216868metallopeptidase family M24 containing protein, expressed
LOC_Os11g33340Os.25454.1.S1_at11/1111+19221535..19232912metallopeptidase family M24 containing protein, expressed
LOC_Os11g33340Os.51301.1.S1_x_at3/1111+19221535..19232912metallopeptidase family M24 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22939.1.A1_at--406--7731NONE
GGTGGCTCAGTGTTTGCCAATCTGA
NONE
Os.22939.1.A1_at--101--8891NONE
TGAGGCATCTGATCCTGAACGTAGA
NONE
Os.22939.1.A1_at--401--9871NONE
TACTTCGACTGGCATGCCTTCTAGA
NONE
Os.22939.1.A1_at--764--1371NONE
AGAGCTGGCACCTGTTCTTGAAGAG
NONE
Os.22939.1.A1_at--1086--6991Chr11:19207272..19207296 (25 bp)
GTACTGTGCGAATACGCCATTCTAC
LOC_Os11g33320
Os.22939.1.A1_at--609--5991Chr11:19207355..19207379 (25 bp)
GGACCGTCTACATGACCGGGTTCTA
LOC_Os11g33320
Os.22939.1.A1_at--15--9611Chr11:19207448..19207472 (25 bp)
TCATCGATCCGACGCGCAAGGTTGA
LOC_Os11g33320
Os.22939.1.A1_at--601--10311Chr11:19207479..19207502 (24 bp)
TTTCAGAAACCAGGCCTACGCAGGG
LOC_Os11g33320
Os.22939.1.A1_at--266--5311NONE
GAAGGACCATGGCTACACTCTGTAT
NONE
Os.22939.1.A1_at--432--8771Chr11:19207526..19207550 (25 bp)
TGTATTAACAAAGCCCAGTTCCCTG
NONE
Os.22939.1.A1_at--615--1231Chr11:19207542..19207566 (25 bp)
AGTTCCCTGGCACTGTGATTACTAT
NONE
Target Sequence 
GGTGGCTCAGTGTTTGCCAATCTGAGGCATCTGATCCTGAACGTAGATATTGACGGATGCCCAAAAGCTAGCACTGGGGT
ACTTCGACTGGCATGCCTTCTAGAGCTGGCACCTGTTCTTGAAGAGTTGGAACTTCATATGTACTGTGCGAATACGCCAT
TCTACACCTCCGATTTGGACGCGGCGGCGACATCGCCGGCGGCTCGTCTCCACGAGCGGCTCAGGACCGTCTACATGACC
GGGTTCTACGGCATCCGTGGCCAGCTGGAGCTGGCGCACCGGATACTCCGGAGCACGGTCGCTCTCGACCGTCTGATCAT
CGATCCGACGCGCAAGGTTGACCACAATTTCAGAAACCAGGCCTACGCAGGGATGGGAAGGACCATGGCTACACTCTGTA
TTAACAAAGCCCAGTTCCCTGGCACTGTGATTACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22939.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis