Browse Element(s) Details


OsAffx.24652.1.S1_x_at

Description tigr:9630.m03830
TID=OsAffx.24652.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g397647/11expressed protein
LOC_Os12g042201/11Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os11g333101/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39730Os.11981.1.S1_x_at11/112+23992210..23994932expressed protein
LOC_Os02g39730Os.25348.1.S1_at11/112+23992210..23994932expressed protein
LOC_Os02g39740Os.27652.1.S1_at10/112+23995062..23997322Tab2 protein, putative, expressed
LOC_Os02g39750NANA2+23999619..24000970hypothetical protein
LOC_Os02g39764OsAffx.24652.1.S1_s_at11/112+24019287..24026406expressed protein
LOC_Os02g39764Os.55114.1.S1_at11/112+24019287..24026406expressed protein
LOC_Os02g39764Os.55705.1.S1_at10/112+24019287..24026406expressed protein
LOC_Os02g39764OsAffx.24652.1.S1_x_at7/112+24019287..24026406expressed protein
LOC_Os02g39764Os.24351.1.A1_at7/112+24019287..24026406expressed protein
LOC_Os02g39764Os.30311.1.S1_at1/112+24019287..24026406expressed protein
LOC_Os02g39780OsAffx.5954.5.S1_x_at7/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.30294.1.S1_at7/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.5954.3.S1_x_at4/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.5954.1.S1_x_at1/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39790Os.7972.1.S1_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39790Os.7972.1.S2_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39800NANA2+24044257..24047199SET domain containing protein
LOC_Os02g39810NANA2+24051352..24052178hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005773cellular_componentvacuole
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0009706cellular_componentchloroplast inner membrane
GO:0005262molecular_functioncalcium channel activity
GO:0005388molecular_functioncalcium-transporting ATPase activity
GO:0005516molecular_functioncalmodulin binding
GO:0015085molecular_functioncalcium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24652.1.S1_x_at--960--6291Chr11:19199739..19199769 (25 bp)
GATGATGGCCGAGATTCTCAGAAGC
LOC_Os11g33310
OsAffx.24652.1.S1_x_at--304--711NONE
ATGATGGCCGAGATTCTCAGAAGCT
NONE
OsAffx.24652.1.S1_x_at--834--4373Chr12:1783753..1783772 (20 bp)
CCAAACAGGGCCTATGTCTTGCTTA
LOC_Os12g04220
OsAffx.24652.1.S1_x_at--44--3292Chr02:24025145..24025166 (22 bp)
CAAACAGGGCCTATGTCTTGCTTAT
NONE
OsAffx.24652.1.S1_x_at--116--2412Chr02:24025145..24025167 (23 bp)
AAACAGGGCCTATGTCTTGCTTATC
NONE
OsAffx.24652.1.S1_x_at--589--8432Chr02:24025149..24025171 (23 bp)
GGCCTATGTCTTGCTTATCAGTTCA
NONE
OsAffx.24652.1.S1_x_at--861--3692Chr02:24025152..24025171 (20 bp)
CTATGTCTTGCTTATCAGTTCAGTT
NONE
OsAffx.24652.1.S1_x_at--63--10431Chr02:24025009..24025033 (25 bp)
TTATCAGTTCAGTTTGTTCTTCTCA
LOC_Os02g39764
OsAffx.24652.1.S1_x_at--228--3451Chr02:24025000..24025024 (25 bp)
CAGTTTGTTCTTCTCAATGTTTCCG
LOC_Os02g39764
OsAffx.24652.1.S1_x_at--541--8771NONE
TGTTTCCGGTTGCAGTTTGTTGGCT
NONE
OsAffx.24652.1.S1_x_at--1024--10651NONE
TTCCGGTTGCAGTTTGTTGGCTTCA
NONE
Target Sequence 
GATGATGGCCGAGATTCTCAGAAGCTGTGGACTGTTTGGGGCAGCTTCTAACAGAAGTAGCTTTTGGGAAAAGCTGCAGC
TGGGAGAAGCTCCCCCAAACAGGGCCTATGTCTTGCTTATCAGTTCAGTTTGTTCTTCTCAATGTTTCCGGTTGCAGTTT
GTTGGCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24652.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis