Browse Element(s) Details


Os.24351.1.A1_at

Description gb:CA761694
DB_XREF= gi:25805733
DB_XREF=BR060012A20A02.ab1
CLONE=BR060012A20A02.ab1
TID=Os.24351.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24351 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g397647/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39730Os.11981.1.S1_x_at11/112+23992210..23994932expressed protein
LOC_Os02g39730Os.25348.1.S1_at11/112+23992210..23994932expressed protein
LOC_Os02g39740Os.27652.1.S1_at10/112+23995062..23997322Tab2 protein, putative, expressed
LOC_Os02g39750NANA2+23999619..24000970hypothetical protein
LOC_Os02g39764OsAffx.24652.1.S1_s_at11/112+24019287..24026406expressed protein
LOC_Os02g39764Os.55114.1.S1_at11/112+24019287..24026406expressed protein
LOC_Os02g39764Os.55705.1.S1_at10/112+24019287..24026406expressed protein
LOC_Os02g39764OsAffx.24652.1.S1_x_at7/112+24019287..24026406expressed protein
LOC_Os02g39764Os.24351.1.A1_at7/112+24019287..24026406expressed protein
LOC_Os02g39764Os.30311.1.S1_at1/112+24019287..24026406expressed protein
LOC_Os02g39780OsAffx.5954.5.S1_x_at7/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.30294.1.S1_at7/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.5954.3.S1_x_at4/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.5954.1.S1_x_at1/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39790Os.7972.1.S1_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39790Os.7972.1.S2_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39800NANA2+24044257..24047199SET domain containing protein
LOC_Os02g39810NANA2+24051352..24052178hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24351.1.A1_at--621--7251Chr02:24022497..24022521 (25 bp)
GTCCTGTGTTCTTCATAGAGTCGCT
LOC_Os02g39764
Os.24351.1.A1_at--316--6111Chr02:24022480..24022504 (25 bp)
GAGTCGCTGCAAAACTGTTAGTGAT
LOC_Os02g39764
Os.24351.1.A1_at--993--6331Chr02:24022458..24022482 (25 bp)
GATGCTTTCCTTTATGTTGGCCTAA
LOC_Os02g39764
Os.24351.1.A1_at--122--10871NONE
TTGGCTACGGTTACTTCACATGTGG
NONE
Os.24351.1.A1_at--960--2071Chr02:24022413..24022437 (25 bp)
ACATGTGGTTTTCTTTGGACCTCAC
LOC_Os02g39764
Os.24351.1.A1_at--708--8531Chr02:24022398..24022422 (25 bp)
TGGACCTCACTTTATTCGCATATTG
LOC_Os02g39764
Os.24351.1.A1_at--1158--4931NONE
GCATTATTTCAAGCGGGCAACTGTT
NONE
Os.24351.1.A1_at--413--8231Chr02:24022345..24022368 (24 bp)
GGCAACTGTTTCATCCTGTACTATA
LOC_Os02g39764
Os.24351.1.A1_at--1020--711NONE
ATGATTACGTATTGTCTACTCCCTC
NONE
Os.24351.1.A1_at--641--5131NONE
GCAAACTCTGGGTTTCTGTACCAAC
NONE
Os.24351.1.A1_at--445--1191Chr02:24022005..24022029 (25 bp)
AGTAGTGCACCATTGTATTCATCAT
LOC_Os02g39764
Target Sequence 
GTCCTGTGTTCTTCATAGAGTCGCTGCAAAACTGTTAGTGATGCTTTCCTTTATGTTGGCCTAATAATTGGCTACGGTTA
CTTCACATGTGGTTTTCTTTGGACCTCACTTTATTCGCATATTGCTGAATTGCATTTGCATTATTTCAAGCGGGCAACTG
TTTCATCCTGTACTATAACCCTTTATGTCATCAAGAAGCACTGTACTGTAATTGTTGGGAATTGTAGGACAATGATTACG
TATTGTCTACTCCCTCCGTAAAAAAAAAGGCAAACTCTGGGTTTCTGTACCAACGTTTGACTGTCCGTTTTATATGAAAT
TTTTTTATAATTAGTATTTTCATTGTTGTTAGATGATAAAACATGATTAATATTTTATGTGTGACTTATTTTTTTAATTT
TTTCATAATTTTTTTAAATAAGACGAACGGTCAAACGTTGGACATGGAAACCAGGATTTGTCTTTTTTTGAGACGGAGGG
AGTATGAATGTAGTAGTGCACCATTGTATTCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24351.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis