Browse Element(s) Details


Os.30311.1.S1_at

Description gb:AK109004.1
DB_XREF= gi:32994213
TID=Os.30311.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30311 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to carboxylesterase (OJ1003_C06.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-H02, full insert sequence.
FL= gb:AK109004.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4486011/11alpha/beta hydrolase fold family protein, putative, expressed
LOC_Os02g336301/11WD-40 repeat family protein, putative
LOC_Os02g397641/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44830Os.33874.2.A1_x_at9/117+26766682..26772424proline-rich family protein, putative, expressed
LOC_Os07g44840Os.37200.1.S1_at11/117+26773715..26776982Protein yrdA, putative, expressed
LOC_Os07g44850OsAffx.28906.1.S1_x_at11/117+26778412..26779437PrMC3, putative, expressed
LOC_Os07g44860Os.30311.1.S1_at11/117+26781185..26782868alpha/beta hydrolase fold family protein, putative, expressed
LOC_Os07g44870OsAffx.28907.1.S1_at10/117+26783302..26784429hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_x_at9/117+26785165..26785458hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_at8/117+26785165..26785458hypothetical protein
LOC_Os07g44890Os.28558.1.S1_at11/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44890OsAffx.28906.1.S1_x_at1/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44900Os.22197.1.S1_at1/117+26791757..26792797serine hydrolase, putative, expressed
LOC_Os07g44910Os.29933.1.S1_at11/117+26794498..26795817PrMC3, putative, expressed
LOC_Os07g44920Os.43269.1.S1_x_at3/117+26800833..26801431Dirigent-like protein
LOC_Os07g44930Os.43269.1.S1_x_at1/117+26803569..26804441Dirigent-like protein, expressed
LOC_Os07g44940Os.36008.2.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.2.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.1.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_at10/117+26804729..26807353ATP12 ATPase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30311.1.S1_at--738--4951Chr07:26781757..26781781 (25 bp)
GCATAGCTCCAACCGTATGGCTTAA
LOC_Os07g44860
Os.30311.1.S1_at--1138--3071Chr07:26781696..26781720 (25 bp)
AATCACACGCAGAATTCGACGCTAT
LOC_Os07g44860
Os.30311.1.S1_at--553--5211Chr07:26781685..26781709 (25 bp)
GAATTCGACGCTATCATGCTGGCTT
LOC_Os07g44860
Os.30311.1.S1_at--894--4711Chr07:26781668..26781692 (25 bp)
GCTGGCTTCTGCATAATTTAGGAGA
LOC_Os07g44860
Os.30311.1.S1_at--149--231Chr07:26781634..26781658 (25 bp)
ATATTTACAGATACATACCCCTCCG
LOC_Os07g44860
Os.30311.1.S1_at--542--2091Chr07:26781569..26781593 (25 bp)
ACATGCTTTAGGTTCGTAGGTAGGA
LOC_Os07g44860
Os.30311.1.S1_at--545--6011Chr07:26781453..26781477 (25 bp)
GAGAGATACTACTCCTAGGGCCTGT
LOC_Os07g44860
Os.30311.1.S1_at--919--9231Chr07:26781441..26781465 (25 bp)
TCCTAGGGCCTGTTTGGGATCTTTA
LOC_Os07g44860
Os.30311.1.S1_at--475--4918Chr03:24644398..24644762 (25 bp)
GCTTCTCCAGCTTCTGATTTTTTAG
NONE
Os.30311.1.S1_at--148--3431Chr07:26781215..26781239 (25 bp)
CAGGCCCTAGACTTTTTCCTTGTGA
LOC_Os07g44860
Os.30311.1.S1_at--386--7391Chr07:26781194..26781218 (25 bp)
GTGAGTTGTGAGTTTCGTATTCGTT
LOC_Os07g44860
Target Sequence 
GCATAGCTCCAACCGTATGGCTTAATTATATTTGTTCTTTTTTTAAGTGTCCAATTGATCGAATCACACGCAGAATTCGA
CGCTATCATGCTGGCTTCTGCATAATTTAGGAGAAAATTTTAAATATTTACAGATACATACCCCTCCGTCAAAAAAAAAA
ATAATCAATCCTACCTATAAACATGGATACATGCTTTAGGTTCGTAGGTAGGATTTTTTTTCGACAGAGTAGTATGCAAT
AGACTTAAATAAACTAGCTAGTGGGGTTGTATGATTTCTGTATGTATCAAGTAATGAATCATGAGAGAGATACTACTCCT
AGGGCCTGTTTGGGATCTTTAAATTATAAGAAGCAGCTGTTTGGTAGCTAGTTTTTGATAATCTAGAAAAGCTCTGAAAC
CCAGCTTCTCCAGCTTCTGATTTTTTAGTTCATTTTTCAGAATTTGTAACTACAGATTCTCAGAAGTTGTGGACTGTTTG
AGGCAACTTCTAGCAGAATCAGTTTTTAGGAAAAACTGCAGCTGGAACAAGCTCCCCCAAAACAGGCCCTAGACTTTTTC
CTTGTGAGTTGTGAGTTTCGTATTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis