Browse Element(s) Details


Os.28558.1.S1_at

Description gb:AK109437.2
DB_XREF= gi:42821751
TID=Os.28558.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.28558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to carboxylesterase (OJ1003_C06.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-310-B02, full insert sequence.
FL= gb:AK109437.2 gb:AK061012.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4489011/11serine hydrolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44830Os.33874.2.A1_x_at9/117+26766682..26772424proline-rich family protein, putative, expressed
LOC_Os07g44840Os.37200.1.S1_at11/117+26773715..26776982Protein yrdA, putative, expressed
LOC_Os07g44850OsAffx.28906.1.S1_x_at11/117+26778412..26779437PrMC3, putative, expressed
LOC_Os07g44860Os.30311.1.S1_at11/117+26781185..26782868alpha/beta hydrolase fold family protein, putative, expressed
LOC_Os07g44870OsAffx.28907.1.S1_at10/117+26783302..26784429hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_x_at9/117+26785165..26785458hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_at8/117+26785165..26785458hypothetical protein
LOC_Os07g44890Os.28558.1.S1_at11/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44890OsAffx.28906.1.S1_x_at1/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44900Os.22197.1.S1_at1/117+26791757..26792797serine hydrolase, putative, expressed
LOC_Os07g44910Os.29933.1.S1_at11/117+26794498..26795817PrMC3, putative, expressed
LOC_Os07g44920Os.43269.1.S1_x_at3/117+26800833..26801431Dirigent-like protein
LOC_Os07g44930Os.43269.1.S1_x_at1/117+26803569..26804441Dirigent-like protein, expressed
LOC_Os07g44940Os.36008.2.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.2.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.1.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_at10/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44950Os.16597.1.S1_s_at11/117+26808105..26811557bZIP transcription factor family protein, expressed
LOC_Os07g44960Os.8486.1.S2_s_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44960Os.8486.1.S1_a_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44960Os.8486.1.S1_at11/117+26814353..26817493nodulation protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28558.1.S1_at--768--871Chr07:26789562..26789586 (25 bp)
ATGGCGCGCGCGGACTGGTGCTGGA
LOC_Os07g44890
Os.28558.1.S1_at--968--8591Chr07:26789438..26789462 (25 bp)
TGGTCGGAGGGTACGACACGCTGCA
LOC_Os07g44890
Os.28558.1.S1_at--259--4571Chr07:26789256..26789280 (25 bp)
GCGCCGCCCAAATCGAATGCTTAAT
LOC_Os07g44890
Os.28558.1.S1_at--367--4551Chr07:26789251..26789275 (25 bp)
GCCCAAATCGAATGCTTAATTAGAA
LOC_Os07g44890
Os.28558.1.S1_at--334--5411Chr07:26789229..26789253 (25 bp)
GAAGCGTTTTATTTACCTTTGGCAT
LOC_Os07g44890
Os.28558.1.S1_at--1067--111Chr07:26789219..26789243 (25 bp)
ATTTACCTTTGGCATTTCAAAATGT
LOC_Os07g44890
Os.28558.1.S1_at--868--10311Chr07:26789205..26789229 (25 bp)
TTTCAAAATGTTAACCTGGACTGCT
LOC_Os07g44890
Os.28558.1.S1_at--650--2991Chr07:26789199..26789223 (25 bp)
AATGTTAACCTGGACTGCTATTTCA
LOC_Os07g44890
Os.28558.1.S1_at--66--6771Chr07:26789196..26789220 (25 bp)
GTTAACCTGGACTGCTATTTCATAT
LOC_Os07g44890
Os.28558.1.S1_at--135--2631Chr07:26789193..26789217 (25 bp)
AACCTGGACTGCTATTTCATATATA
LOC_Os07g44890
Os.28558.1.S1_at--847--5711Chr07:26789187..26789211 (25 bp)
GACTGCTATTTCATATATATTTTGC
LOC_Os07g44890
Target Sequence 
ATGGCGCGCGCGGACTGGTGCTGGAGGGCGTTCCTGCCGGAGGGCGCCGACCGCGACCACCCGGCGGCGCACGTCACCGG
CGAGAACGCCGAGCTGGCGGAGGAGTTCCCGCCGGCGATGGTGGTGGTCGGAGGGTACGACACGCTGCAGGACTGGCAGC
GGCGGTACGCCGGGATGCTGCGGCGGAATGGGAAGGCGGTGCAGGTGGTGGAGTACCCGGCGGCGATCCACTCCTTCTAC
GTCTTCCCGGAGCTCGCCGACTCCGGCGAGCTCGTCAAGGAGATGAAGGCGTTCATGGAGCGCAACGCGCCGCCCAAATC
GAATGCTTAATTAGAAGCGTTTTATTTACCTTTGGCATTTCAAAATGTTAACCTGGACTGCTATTTCATATATATTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis