Browse Element(s) Details


OsAffx.28907.1.S1_at

Description tigr:9635.m04508
TID=OsAffx.28907.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4487010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44830Os.33874.2.A1_x_at9/117+26766682..26772424proline-rich family protein, putative, expressed
LOC_Os07g44840Os.37200.1.S1_at11/117+26773715..26776982Protein yrdA, putative, expressed
LOC_Os07g44850OsAffx.28906.1.S1_x_at11/117+26778412..26779437PrMC3, putative, expressed
LOC_Os07g44860Os.30311.1.S1_at11/117+26781185..26782868alpha/beta hydrolase fold family protein, putative, expressed
LOC_Os07g44870OsAffx.28907.1.S1_at10/117+26783302..26784429hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_x_at9/117+26785165..26785458hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_at8/117+26785165..26785458hypothetical protein
LOC_Os07g44890Os.28558.1.S1_at11/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44890OsAffx.28906.1.S1_x_at1/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44900Os.22197.1.S1_at1/117+26791757..26792797serine hydrolase, putative, expressed
LOC_Os07g44910Os.29933.1.S1_at11/117+26794498..26795817PrMC3, putative, expressed
LOC_Os07g44920Os.43269.1.S1_x_at3/117+26800833..26801431Dirigent-like protein
LOC_Os07g44930Os.43269.1.S1_x_at1/117+26803569..26804441Dirigent-like protein, expressed
LOC_Os07g44940Os.36008.2.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.2.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.1.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_at10/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44950Os.16597.1.S1_s_at11/117+26808105..26811557bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28907.1.S1_at--98--6211NONE
GAGGCTGGCGAGAAAAATCCCAACA
NONE
OsAffx.28907.1.S1_at--709--91Chr07:26783684..26783708 (25 bp)
ATTCTGCCGGCGATGAACTGGAGTT
LOC_Os07g44870
OsAffx.28907.1.S1_at--24--5471Chr07:26783670..26783694 (25 bp)
GAACTGGAGTTGGTCGTCGCAAGCC
LOC_Os07g44870
OsAffx.28907.1.S1_at--451--1291Chr07:26783590..26783614 (25 bp)
AGATCGACCGCACATCCTGTCACGA
LOC_Os07g44870
OsAffx.28907.1.S1_at--912--4511Chr07:26783560..26783584 (25 bp)
GCCCCGCGACCGTGTTACAGAGCGA
LOC_Os07g44870
OsAffx.28907.1.S1_at--106--10491Chr07:26783546..26783570 (25 bp)
TTACAGAGCGAAGATCTGGCGGCGA
LOC_Os07g44870
OsAffx.28907.1.S1_at--69--9271Chr07:26783500..26783524 (25 bp)
TCCTGCAGCTTGGACGCCGACGGTG
LOC_Os07g44870
OsAffx.28907.1.S1_at--927--9111Chr07:26783477..26783501 (25 bp)
TGCGGAGGCCATATATACGGCACCT
LOC_Os07g44870
OsAffx.28907.1.S1_at--627--9931Chr07:26783462..26783486 (25 bp)
TACGGCACCTGAACGAGTACTGGAA
LOC_Os07g44870
OsAffx.28907.1.S1_at--449--4551Chr07:26783403..26783427 (25 bp)
GCCCATGGCTACGTCGAGTGCGAGA
LOC_Os07g44870
OsAffx.28907.1.S1_at--95--9031Chr07:26783341..26783365 (25 bp)
TGCACACGCCGGTCGTGGAGAAGAC
LOC_Os07g44870
Target Sequence 
GAGGCTGGCGAGAAAAATCCCAACAAATCCAGATTCTGCCGGCGATGAACTGGAGTTGGTCGTCGCAAGCCGAAGGGATG
AAGAAGATAATGAAGAAGCTGAGGAAGTGGAGGATGCTGCAGGAGCAGATCGACCGCACATCCTGTCACGATGTCCGCCC
CGCGACCGTGTTACAGAGCGAAGATCTGGCGGCGAGCGAGGCGGAGGAGGAGGCGCTCCTGCAGCTTGGACGCCGACGGT
GCGGAGGCCATATATACGGCACCTGAACGAGTACTGGAAGGAGCAGCAGGAGTGGGTCAAGGCGGAGCTCGCTGCCCATG
GCTACGTCGAGTGCGAGATCGACGACAACGGCGACAACCCTTGCACCTGCGGCTGTGCACACGCCGGTCGTGGAGAAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis