Browse Element(s) Details


Os.29933.1.S1_at

Description gb:AK109637.1
DB_XREF= gi:32994846
TID=Os.29933.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29933 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to carboxylesterase (OJ1003_C06.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E04, full insert sequence.
FL= gb:AK109637.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4491011/11PrMC3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44830Os.33874.2.A1_x_at9/117+26766682..26772424proline-rich family protein, putative, expressed
LOC_Os07g44840Os.37200.1.S1_at11/117+26773715..26776982Protein yrdA, putative, expressed
LOC_Os07g44850OsAffx.28906.1.S1_x_at11/117+26778412..26779437PrMC3, putative, expressed
LOC_Os07g44860Os.30311.1.S1_at11/117+26781185..26782868alpha/beta hydrolase fold family protein, putative, expressed
LOC_Os07g44870OsAffx.28907.1.S1_at10/117+26783302..26784429hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_x_at9/117+26785165..26785458hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_at8/117+26785165..26785458hypothetical protein
LOC_Os07g44890Os.28558.1.S1_at11/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44890OsAffx.28906.1.S1_x_at1/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44900Os.22197.1.S1_at1/117+26791757..26792797serine hydrolase, putative, expressed
LOC_Os07g44910Os.29933.1.S1_at11/117+26794498..26795817PrMC3, putative, expressed
LOC_Os07g44920Os.43269.1.S1_x_at3/117+26800833..26801431Dirigent-like protein
LOC_Os07g44930Os.43269.1.S1_x_at1/117+26803569..26804441Dirigent-like protein, expressed
LOC_Os07g44940Os.36008.2.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.2.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.1.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_at10/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44950Os.16597.1.S1_s_at11/117+26808105..26811557bZIP transcription factor family protein, expressed
LOC_Os07g44960Os.8486.1.S2_s_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44960Os.8486.1.S1_a_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44960Os.8486.1.S1_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44970OsAffx.30782.1.S1_s_at11/117+26817670..26822563transcription-coupled DNA repair protein, putative, expressed
LOC_Os07g44970Os.33176.1.S1_at11/117+26817670..26822563transcription-coupled DNA repair protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29933.1.S1_at--85--1451Chr07:26795066..26795090 (25 bp)
AGAACCTCCGCCTCGCTGGGATGAT
LOC_Os07g44910
Os.29933.1.S1_at--604--9271Chr07:26794961..26794985 (25 bp)
TCCGGCGGTCGGACTTCTCGTGGAA
LOC_Os07g44910
Os.29933.1.S1_at--1155--5671Chr07:26794950..26794974 (25 bp)
GACTTCTCGTGGAAGGCGTTCCTGC
LOC_Os07g44910
Os.29933.1.S1_at--410--4491Chr07:26794701..26794725 (25 bp)
GCCGGCAAGGTCTTGCAGGACATCA
LOC_Os07g44910
Os.29933.1.S1_at--849--8791Chr07:26794673..26794697 (25 bp)
TGTTCGTCCAGAGCAACAGGGCGGC
LOC_Os07g44910
Os.29933.1.S1_at--677--4171Chr07:26794645..26794669 (25 bp)
CGCCACCGCCTGAATTGAGATTCGA
LOC_Os07g44910
Os.29933.1.S1_at--936--1331Chr07:26794621..26794645 (25 bp)
AGAGTTTGATCTGCTTCGTACCGTA
LOC_Os07g44910
Os.29933.1.S1_at--409--9071Chr07:26794610..26794634 (25 bp)
TGCTTCGTACCGTACACGCGTCGTA
LOC_Os07g44910
Os.29933.1.S1_at--968--1811Chr07:26794595..26794619 (25 bp)
ACGCGTCGTACACTTCATATACTTG
LOC_Os07g44910
Os.29933.1.S1_at--854--3191Chr07:26794543..26794567 (25 bp)
CAAGGTGAAAGTTTAAGGCCGCAGT
LOC_Os07g44910
Os.29933.1.S1_at--588--871Chr07:26794528..26794552 (25 bp)
AGGCCGCAGTTAAAAGTTTCGTATG
LOC_Os07g44910
Target Sequence 
AGAACCTCCGCCTCGCTGGGATGATCCCCGTGCAGCCGTACTTCGGCGGCGAGGAGAGGACGCCCTCCGAGCTGGCGCTC
GACGGCGTGGCGCCGGTGGTGAACCTCCGGCGGTCGGACTTCTCGTGGAAGGCGTTCCTGCCGGTGGGCGCCGACCGCGA
CCACCCGGCGGCGCACGTCACCGACGAGAACGCCGAGCTGGCGGAGGCGTTCCCGCCGGCGATGGTGGTGATCGGAGGGT
TCGACCCGCTGCAGGACTGGCAGCGGCGGTACGTCGACGTGCTGCGGCGGAAGGGGAAGGCGGTGGAGGTGGCGGAGTTC
CCCGACGCCTTCCATGGCTTCTACGGCTTCCCGGAGCTCGCCGACGCCGGCAAGGTCTTGCAGGACATCAAGGTGTTCGT
CCAGAGCAACAGGGCGGCGCGCGCCACCGCCTGAATTGAGATTCGAGAGTTTGATCTGCTTCGTACCGTACACGCGTCGT
ACACTTCATATACTTGAGATTTTGAATTGGGATTTCTGTGATTCAAGGTGAAAGTTTAAGGCCGCAGTTAAAAGTTTCGT
ATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis