Browse Element(s) Details


OsAffx.30782.1.S1_s_at

Description tigr:9639.m00157
TID=OsAffx.30782.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4497011/11transcription-coupled DNA repair protein, putative, expressed
LOC_Os11g0251011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44900Os.22197.1.S1_at1/117+26791757..26792797serine hydrolase, putative, expressed
LOC_Os07g44910Os.29933.1.S1_at11/117+26794498..26795817PrMC3, putative, expressed
LOC_Os07g44920Os.43269.1.S1_x_at3/117+26800833..26801431Dirigent-like protein
LOC_Os07g44930Os.43269.1.S1_x_at1/117+26803569..26804441Dirigent-like protein, expressed
LOC_Os07g44940Os.36008.2.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.2.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.1.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_at10/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44950Os.16597.1.S1_s_at11/117+26808105..26811557bZIP transcription factor family protein, expressed
LOC_Os07g44960Os.8486.1.S2_s_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44960Os.8486.1.S1_a_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44960Os.8486.1.S1_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44970OsAffx.30782.1.S1_s_at11/117+26817670..26822563transcription-coupled DNA repair protein, putative, expressed
LOC_Os07g44970Os.33176.1.S1_at11/117+26817670..26822563transcription-coupled DNA repair protein, putative, expressed
LOC_Os07g44980Os.38395.3.S1_x_at3/117+26829351..26832167hypothetical protein
LOC_Os07g44980Os.38395.5.S1_at2/117+26829351..26832167hypothetical protein
LOC_Os07g44980Os.38395.2.S1_x_at2/117+26829351..26832167hypothetical protein
LOC_Os07g44990Os.2987.3.S1_x_at2/117+26836213..26838611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45000Os.27701.1.A1_at9/117+26843026..26848619Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0005622cellular_componentintracellular
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30782.1.S1_s_at--191--8973Chr11:777585..777609 (25 bp)
TGAAACGAGCCGGTGTTCCTGAGGA
LOC_Os11g02510
OsAffx.30782.1.S1_s_at--590--2593Chr11:777588..777612 (25 bp)
AACGAGCCGGTGTTCCTGAGGATGA
LOC_Os11g02510
OsAffx.30782.1.S1_s_at--55--6292Chr11:777608..777632 (25 bp)
GATGAGATGGCTAACCTAGAAAGGC
LOC_Os11g02510
OsAffx.30782.1.S1_s_at--796--6232Chr11:777613..777637 (25 bp)
GATGGCTAACCTAGAAAGGCAACTA
LOC_Os11g02510
OsAffx.30782.1.S1_s_at--1110--5573Chr11:777626..777650 (25 bp)
GAAAGGCAACTAGCGCCAGGACCTT
LOC_Os11g02510
OsAffx.30782.1.S1_s_at--1083--3813Chr11:777675..777699 (25 bp)
CTGCTAACCGGATGATGAACTTTGT
LOC_Os11g02510
OsAffx.30782.1.S1_s_at--627--9793Chr11:777679..777703 (25 bp)
TAACCGGATGATGAACTTTGTCAGT
LOC_Os11g02510
OsAffx.30782.1.S1_s_at--1000--4253Chr11:777682..777706 (25 bp)
CCGGATGATGAACTTTGTCAGTGCT
LOC_Os11g02510
OsAffx.30782.1.S1_s_at--368--713Chr11:777686..777710 (25 bp)
ATGATGAACTTTGTCAGTGCTGGAG
LOC_Os11g02510
OsAffx.30782.1.S1_s_at--1070--3453Chr11:777700..777724 (25 bp)
CAGTGCTGGAGTGCAGGCACAGGCT
LOC_Os11g02510
OsAffx.30782.1.S1_s_at--112--1132Chr11:777709..777733 (25 bp)
AGTGCAGGCACAGGCTGAGAGCAGC
LOC_Os11g02510
Target Sequence 
TGAAACGAGCCGGTGTTCCTGAGGATGAGATGGCTAACCTAGAAAGGCAACTAGCGCCAGGACCTTCCACAGCTCCACCA
GCTCCAAGCACTGCTAACCGGATGATGAACTTTGTCAGTGCTGGAGTGCAGGCACAGGCTGAGAGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30782.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis