Browse Element(s) Details


Os.27701.1.A1_at

Description gb:AK121053.1
DB_XREF= gi:37990676
TID=Os.27701.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27701 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1003_C06.42), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055N06, full insert sequence.
FL= gb:AK121053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g450009/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44970OsAffx.30782.1.S1_s_at11/117+26817670..26822563transcription-coupled DNA repair protein, putative, expressed
LOC_Os07g44970Os.33176.1.S1_at11/117+26817670..26822563transcription-coupled DNA repair protein, putative, expressed
LOC_Os07g44980Os.38395.3.S1_x_at3/117+26829351..26832167hypothetical protein
LOC_Os07g44980Os.38395.5.S1_at2/117+26829351..26832167hypothetical protein
LOC_Os07g44980Os.38395.2.S1_x_at2/117+26829351..26832167hypothetical protein
LOC_Os07g44990Os.2987.3.S1_x_at2/117+26836213..26838611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45000Os.27701.1.A1_at9/117+26843026..26848619Cytochrome P450 family protein, expressed
LOC_Os07g45010OsAffx.22025.1.S1_at11/117+26850697..26852927hypothetical protein
LOC_Os07g45020NANA7+26860897..26866989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45030NANA7+26867305..26870246retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45039NANA7+26871223..26872287expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27701.1.A1_at--833--4971Chr07:26848073..26848097 (25 bp)
GCATCTGAAGCAGCACCTTGACAAA
LOC_Os07g45000
Os.27701.1.A1_at--411--7531Chr07:26848146..26848170 (25 bp)
GTGGCATGCCAGGATATGGTCTCTG
LOC_Os07g45000
Os.27701.1.A1_at--411--5751Chr07:26848229..26848253 (25 bp)
GACGTGGATGGTTTTTTCCTCCAGA
LOC_Os07g45000
Os.27701.1.A1_at--500--9191Chr07:26848248..26848272 (25 bp)
TCCAGATTTTTAACGGCCCCAGTGA
LOC_Os07g45000
Os.27701.1.A1_at--1093--4171Chr07:26848265..26848289 (25 bp)
CCCAGTGAGCTTTTCTAGACCTAGT
LOC_Os07g45000
Os.27701.1.A1_at--120--5831Chr07:26848282..26848306 (25 bp)
GACCTAGTTTCCATTAATTAGCGTT
LOC_Os07g45000
Os.27701.1.A1_at--186--151Chr07:26848298..26848322 (25 bp)
ATTAGCGTTTTGAGGCACTTGTGGG
LOC_Os07g45000
Os.27701.1.A1_at--88--6151Chr07:26848337..26848361 (25 bp)
GAGGTGTGTACCGATGTGCATAAAC
LOC_Os07g45000
Os.27701.1.A1_at--282--3331NONE
CACTGTATGGTTGTATCGTGCGCGG
NONE
Os.27701.1.A1_at--684--4571NONE
GCGCGGGAGCGCAGAATCTGTTAAT
NONE
Os.27701.1.A1_at--696--3871Chr07:26848534..26848557 (24 bp)
CTGTTGATTGTTTCTTCCACCGTAA
LOC_Os07g45000
Target Sequence 
GCATCTGAAGCAGCACCTTGACAAATTAAAGCTTGACGCATTTNCCCTTGATTACAATANATGNTTTTTTACTGGTGGCA
TGCCAGGATATGGTCTCTGNNTTTTTTTTCNGAAGCAATATGGTCTCCAAGCTTGCTTTCTTTCCATCNCNNNNANCNNC
GCAGAAACCGCGACGTGGATGGTTTTTTCCTCCAGATTTTTAACGGCCCCAGTGAGCTTTTCTAGACCTAGTTTCCATTA
ATTAGCGTTTTGAGGCACTTGTGGGCGGTTAAATCACAGGAGGTGTGTACCGATGTGCATAAACCAATAGTAGCTTCTTC
TTTTTTTCTTATTTTTTTCCGGTTGGTGTTTTCTTCTCCTTCTGGAGGAATGTAATGTTTTATGATGCACTGTATGGTTG
TATCGTGCGCGGGAGCGCAGAATCTGTTAATGAGTTTAGTGTACCATGTACCTATATATATGGTCACATTGTATTACTGT
TGATTGTTTCTTCCACCGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27701.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis