Browse Element(s) Details


OsAffx.22025.1.S1_at

Description tigr:9635.m04521
TID=OsAffx.22025.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4501011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44980Os.38395.3.S1_x_at3/117+26829351..26832167hypothetical protein
LOC_Os07g44980Os.38395.5.S1_at2/117+26829351..26832167hypothetical protein
LOC_Os07g44980Os.38395.2.S1_x_at2/117+26829351..26832167hypothetical protein
LOC_Os07g44990Os.2987.3.S1_x_at2/117+26836213..26838611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45000Os.27701.1.A1_at9/117+26843026..26848619Cytochrome P450 family protein, expressed
LOC_Os07g45010OsAffx.22025.1.S1_at11/117+26850697..26852927hypothetical protein
LOC_Os07g45020NANA7+26860897..26866989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45030NANA7+26867305..26870246retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45039NANA7+26871223..26872287expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22025.1.S1_at--377--2891Chr07:26851891..26851915 (25 bp)
AAGGTGTCCCGAACTTGCATACTTT
LOC_Os07g45010
OsAffx.22025.1.S1_at--483--1211Chr07:26852337..26852361 (25 bp)
AGTTATCTATTCTTTGCATTCATGT
LOC_Os07g45010
OsAffx.22025.1.S1_at--18--3551Chr07:26852406..26852430 (25 bp)
CATCCGTTGAGCTCCTTTGTATTGA
LOC_Os07g45010
OsAffx.22025.1.S1_at--851--471Chr07:26852633..26852657 (25 bp)
ATCTGAGTTCACTGGCACCAGAAAT
LOC_Os07g45010
OsAffx.22025.1.S1_at--392--2751Chr07:26852668..26852692 (25 bp)
AAGAACTCCAGTTCACTGGCTTTAG
LOC_Os07g45010
OsAffx.22025.1.S1_at--286--891Chr07:26852722..26852746 (25 bp)
AGGCCATCATGGAGCAAGCTCGCAA
LOC_Os07g45010
OsAffx.22025.1.S1_at--263--1491Chr07:26852734..26852758 (25 bp)
AGCAAGCTCGCAACCTGCAGACTGT
LOC_Os07g45010
OsAffx.22025.1.S1_at--647--5431Chr07:26852775..26852799 (25 bp)
GAACCATGCGAGGACTGTGAGGCAT
LOC_Os07g45010
OsAffx.22025.1.S1_at--1084--8671Chr07:26852790..26852814 (25 bp)
TGTGAGGCATTAGGCACGCCTCTTT
LOC_Os07g45010
OsAffx.22025.1.S1_at--718--1271Chr07:26852825..26852849 (25 bp)
AGATCATGACTTCCCAAAGTCGAAG
LOC_Os07g45010
OsAffx.22025.1.S1_at--465--5611Chr07:26852859..26852883 (25 bp)
GACAATGTAGTCGAGCAGCTCAGAG
LOC_Os07g45010
Target Sequence 
AAGGTGTCCCGAACTTGCATACTTTGACAATAGATTTCCAAGGAGAAAAGTTATGGATGCAACCTGAACAAAAACAGCTC
TGCCCTGCATTCAACAATCTAAAGAAGTTATCTATTCTTTGCATTCATGTTGAATTTGACCTGTTATGGACTATAAACCT
CCTTGAAGCTGCACCATCCGTTGAGCTCCTTTGTATTGATACCTGGGAACATGTATGCTTGGTAAACAAAGAGGATGAAG
ATGGAAGAAAGCTTGTTCATGGAGAAACAACACATCCTTCATGGGAGATATCTGAGTTCACTGGCACCAGAAATTGGCAA
TTGAAAGAACTCCAGTTCACTGGCTTTAGGCCACTCAAGCAACAATTGGTCTTTTTAAAGGCCATCATGGAGCAAGCTCG
CAACCTGCAGACTGTTATTCTGAAAGAGGAAGAACCATGCGAGGACTGTGAGGCATTAGGCACGCCTCTTTCTTGTATAA
AAGATCATGACTTCCCAAAGTCGAAGGATGAGCAAGACAATGTAGTCGAGCAGCTCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis