Browse Element(s) Details


Os.38395.3.S1_x_at

Description gb:NM_189293.1
DB_XREF= gi:34905669
GEN=P0475H04.18
TID=Os.38395.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38395 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative mutator-like transposase (OSJNBa0065J17.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0475H04.18 (P0475H04.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5545011/11transposon protein, putative, Mutator sub-class
LOC_Os01g1989411/11transposon protein, putative, Mutator sub-class
LOC_Os04g5309011/11SWIM zinc finger family protein
LOC_Os05g1691011/11transposon protein, putative, Mutator sub-class
LOC_Os03g4514011/11transposon protein, putative, Mutator sub-class
LOC_Os04g4184011/11transposon protein, putative, Mutator sub-class
LOC_Os03g0579011/11transposon protein, putative, Mutator sub-class
LOC_Os11g2541011/11Transposable element protein, putative, MuDR
LOC_Os06g3580011/11Transposable element protein, putative, MuDR
LOC_Os02g4399011/11hypothetical protein
LOC_Os07g2024011/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g2261011/11transposon protein, putative, Mutator sub-class
LOC_Os11g1364010/11transposon protein, putative, Mutator sub-class
LOC_Os04g0242010/11transposon protein, putative, Mutator sub-class
LOC_Os01g6317010/11transposon protein, putative, Mutator sub-class
LOC_Os05g3978010/11transposon protein, putative, Mutator sub-class
LOC_Os04g2473010/11transposon protein, putative, Mutator sub-class
LOC_Os01g362509/11transposon protein, putative, Mutator sub-class
LOC_Os01g239309/11transposon protein, putative, Mutator sub-class
LOC_Os01g416209/11transposon protein, putative, Mutator sub-class
LOC_Os09g172009/11transposon protein, putative, Mutator sub-class
LOC_Os01g362608/11Transposable element protein, putative, MuDR
LOC_Os03g021308/11hypothetical protein
LOC_Os11g151708/11transposon protein, putative, Mutator sub-class
LOC_Os08g139708/11retrotransposon protein, putative, unclassified
LOC_Os06g191608/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g395807/11hypothetical protein
LOC_Os03g030506/11expressed protein
LOC_Os07g449803/11hypothetical protein
LOC_Os02g306802/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55410Os.17903.1.S1_at11/114+32736641..32740875Glycerol kinase, putative, expressed
LOC_Os04g55410Os.54646.1.S1_at1/114+32736641..32740875Glycerol kinase, putative, expressed
LOC_Os04g55410Os.28089.1.S2_at1/114+32736641..32740875Glycerol kinase, putative, expressed
LOC_Os04g55420Os.52699.1.S1_at11/114+32744512..32747933Leucine Rich Repeat family protein, expressed
LOC_Os04g55430Os.20602.2.S1_x_at10/114+32749285..32751465hAT family dimerisation domain containing protein
LOC_Os04g55440Os.57007.1.S1_at11/114+32755775..32758622Leucine Rich Repeat family protein, expressed
LOC_Os04g55450Os.38395.3.S1_x_at11/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.4.S1_x_at9/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.2.S1_x_at9/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.5.S1_at3/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.1.S1_at1/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55480Os.49456.1.S1_at10/114+32775229..32780712Zn-finger in ubiquitin-hydrolases and other protein, expressed
LOC_Os04g55490Os.55538.1.S1_at11/114+32782815..32783933expressed protein
LOC_Os04g55500Os.5453.1.S1_at11/114+32787254..32793839expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38395.3.S1_x_at--1073--106725Chr11:13989461..13989485 (25 bp)
TTCCAGCGTGGATCGGAGTGGTCCA
LOC_Os11g25410
Os.38395.3.S1_x_at--98--79726Chr11:13989470..13989494 (25 bp)
GGATCGGAGTGGTCCATCCTCTTCA
LOC_Os11g25410
Os.38395.3.S1_x_at--706--5526Chr11:13989485..13989509 (25 bp)
ATCCTCTTCACGTCGCGGGTACGAA
LOC_Os11g25410
Os.38395.3.S1_x_at--856--17126Chr11:13989614..13989674 (25 bp)
ACCACGTCCGCAGGGAGCATCTGGG
LOC_Os11g25410
Os.38395.3.S1_x_at--961--76326Chr11:13989662..13989686 (25 bp)
GGGAGCATCTGGGTCGGCACACTTC
LOC_Os11g25410
Os.38395.3.S1_x_at--873--85928Chr11:13989671..13989695 (25 bp)
TGGGTCGGCACACTTCCCTTACATG
LOC_Os11g25410
Os.38395.3.S1_x_at--336--25724Chr11:13989708..13989732 (25 bp)
AACGTGTTGAACACACCAGCATGGG
LOC_Os11g25410
Os.38395.3.S1_x_at--322--76330Chr11:13989731..13989755 (25 bp)
GGGACTTCATATCACTCCGCGTGCG
LOC_Os11g25410
Os.38395.3.S1_x_at--948--72930Chr11:13989751..13989775 (25 bp)
GTGCGCCAGAGCAGGGCCACACACA
LOC_Os11g25410
Os.38395.3.S1_x_at--969--59326Chr11:13989759..13989783 (25 bp)
GAGCAGGGCCACACACAGCACACAT
LOC_Os11g25410
Os.38395.3.S1_x_at--254--34122Chr11:13989774..13989895 (25 bp)
CAGCACACATACGATGAGTACGGTT
LOC_Os11g25410
Target Sequence 
TTCCAGCGTGGATCGGAGTGGTCCATCCTCTTCACGTCGCGGGTACGAAGCGGCCCACACATCTCACGGTCGTCCTTCCT
TTCAGCACACCCCAGCACCAGAGTACACCAGGGGGTCAGCCGGATCAGGGGTACCCACGTCGAGCACGGCACCACCACGT
CCGCAGGGAGCATCTGGGTCGGCACACTTCCCTTACATGCCAACGGGGGATAACGTGTTGAACACACCAGCATGGGGACT
TCATATCACTCCGCGTGCGCCAGAGCAGGGCCACACACAGCACACATACGATGAGTACGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38395.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis