Browse Element(s) Details


Os.20602.2.S1_x_at

Description gb:NM_190919.1
DB_XREF= gi:34908921
GEN=P0691E06.11
TID=Os.20602.2
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.20602 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) transposase (P0691E06.11), mRNA.
PROD=transposase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1528011/11hAT family dimerisation domain containing protein, expressed
LOC_Os12g1227011/11hAT family dimerisation domain containing protein
LOC_Os05g0778011/11hAT family dimerisation domain containing protein
LOC_Os11g3832011/11hAT family dimerisation domain containing protein
LOC_Os12g3860011/11hAT family dimerisation domain containing protein
LOC_Os12g4294011/11hAT family dimerisation domain containing protein
LOC_Os05g0337011/11transposon protein, putative, unclassified
LOC_Os10g2007011/11hAT family dimerisation domain containing protein
LOC_Os05g0440011/11hypothetical protein
LOC_Os11g0504011/11hAT family dimerisation domain containing protein
LOC_Os10g1097011/11hAT family dimerisation domain containing protein
LOC_Os07g0651011/11hAT family dimerisation domain containing protein
LOC_Os03g6300011/11hAT family dimerisation domain containing protein
LOC_Os04g5398011/11hAT family dimerisation domain containing protein
LOC_Os12g4275011/11hAT family dimerisation domain containing protein
LOC_Os10g3680011/11hAT family dimerisation domain containing protein
LOC_Os07g0935011/11hAT family dimerisation domain containing protein
LOC_Os01g5856011/11hAT family dimerisation domain containing protein
LOC_Os01g2410011/11hAT family dimerisation domain containing protein
LOC_Os06g3695011/11hAT family dimerisation domain containing protein
LOC_Os06g4581011/11hAT family dimerisation domain containing protein
LOC_Os10g1709011/11hAT family dimerisation domain containing protein
LOC_Os03g0895011/11hAT family dimerisation domain containing protein
LOC_Os11g0900011/11hAT family dimerisation domain containing protein
LOC_Os01g3966011/11hAT family dimerisation domain containing protein
LOC_Os10g1133011/11hAT family dimerisation domain containing protein
LOC_Os05g1513011/11hAT family dimerisation domain containing protein
LOC_Os11g0408011/11hAT family dimerisation domain containing protein
LOC_Os06g3324011/11hAT family dimerisation domain containing protein
LOC_Os05g4462011/11hAT family dimerisation domain containing protein, expressed
LOC_Os12g0127010/11hAT family dimerisation domain containing protein
LOC_Os10g2684010/11hAT family dimerisation domain containing protein
LOC_Os09g2199010/11hAT family dimerisation domain containing protein
LOC_Os11g3842010/11hAT family dimerisation domain containing protein
LOC_Os12g1854010/11hAT family dimerisation domain containing protein
LOC_Os08g2059010/11hAT family dimerisation domain containing protein
LOC_Os08g2392010/11hAT family dimerisation domain containing protein
LOC_Os06g3854010/11hAT family dimerisation domain containing protein
LOC_Os11g4387010/11hAT family dimerisation domain containing protein
LOC_Os04g5543010/11hAT family dimerisation domain containing protein
LOC_Os11g434009/11hAT family dimerisation domain containing protein
LOC_Os02g403509/11hAT family dimerisation domain containing protein
LOC_Os02g247609/11Transposase, putative
LOC_Os08g126109/11hAT family dimerisation domain containing protein, expressed
LOC_Os07g416709/11hAT family dimerisation domain containing protein
LOC_Os05g469109/11hAT family dimerisation domain containing protein
LOC_Os06g487109/11hAT family dimerisation domain containing protein
LOC_Os11g367908/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15220OsAffx.22222.3.S1_x_at11/111+8521973..8522956expressed protein
LOC_Os01g15220OsAffx.22222.3.S1_at11/111+8521973..8522956expressed protein
LOC_Os01g15229OsAffx.22222.1.S1_x_at11/111+8524356..8525156hypothetical protein
LOC_Os01g15240NANA1+8529014..8529721hypothetical protein
LOC_Os01g15250OsAffx.23257.1.S1_at11/111+8532477..8533844expressed protein
LOC_Os01g15260OsAffx.27867.1.S1_s_at11/111+8537445..8541331Dynein light chain 1, cytoplasmic, putative, expressed
LOC_Os01g15260Os.10666.1.S1_at9/111+8537445..8541331Dynein light chain 1, cytoplasmic, putative, expressed
LOC_Os01g15270Os.37869.2.S1_a_at11/111+8542802..8543674expressed protein
LOC_Os01g15270Os.40139.1.A1_x_at3/111+8542802..8543674expressed protein
LOC_Os01g15280Os.20602.2.S1_x_at11/111+8547101..8549448hAT family dimerisation domain containing protein, expressed
LOC_Os01g15290Os.51824.1.S1_at10/111+8552091..855394850S ribosomal protein L18, putative, expressed
LOC_Os01g15300Os.49825.1.S1_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15300Os.197.2.S1_x_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15310Os.197.1.S1_a_at9/111+8567682..8571357U6 snRNA-associated Sm-like protein LSm4, putative, expressed
LOC_Os01g15320Os.10662.1.S1_at11/111+8574045..8574725Rapid ALkalinization Factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20602.2.S1_x_at--270--86350Chr12:26649331..26649355 (25 bp)
TGGTGGCAGTTCGTCGGCTACAAGT
LOC_Os12g42940
Os.20602.2.S1_x_at--1084--28546Chr12:26649352..26649376 (25 bp)
AAGTGGAGACGCCTCTTCGCATGTT
LOC_Os12g42940
Os.20602.2.S1_x_at--680--42545Chr12:26649393..26649417 (25 bp)
CCGGTTATTTGGACAGCGACGCCAT
LOC_Os12g42940
Os.20602.2.S1_x_at--633--14747Chr12:26649427..26649451 (25 bp)
AGCACAAGATTTCAACGTCCTCGGG
LOC_Os12g42940
Os.20602.2.S1_x_at--277--25148Chr12:26649472..26649496 (25 bp)
AACATATCCTGTGCTTTCAAAACTA
LOC_Os12g42940
Os.20602.2.S1_x_at--765--92947Chr12:26649536..26649560 (25 bp)
TCCGAATCGGCCTTCAGTCTATGCG
LOC_Os12g42940
Os.20602.2.S1_x_at--608--71547Chr12:26649552..26649576 (25 bp)
GTCTATGCGGCCGAATCATCGAAGA
LOC_Os12g42940
Os.20602.2.S1_x_at--950--80148Chr12:26649579..26649603 (25 bp)
GGAGGACGACTCTGCGCAGCGACCA
LOC_Os12g42940
Os.20602.2.S1_x_at--231--46149Chr12:26649597..26649621 (25 bp)
GCGACCACGTCGAAATGCTACTAAG
LOC_Os12g42940
Os.20602.2.S1_x_at--64--27748Chr12:26649627..26649651 (25 bp)
AAGACTGGGAGCTTGCTCGACAACA
LOC_Os12g42940
Os.20602.2.S1_x_at--1070--56149Chr12:26649645..26649669 (25 bp)
GACAACATGCCCAATACACTGCGGA
LOC_Os12g42940
Target Sequence 
TGGTGGCAGTTCGTCGGCTACAAGTGGAGACGCCTCTTCGCATGTTGTGGCCGAAGAGTTGTCCGGTTATTTGGACAGCG
ACGCCATCCACCACGAAGCACAAGATTTCAACGTCCTCGGGTGGTGGAATGACCACAAGATAACATATCCTGTGCTTTCA
AAACTAGCACGGGATGTGTTGACGGTGCCCGTGTCGACGGTGTCCTCCGAATCGGCCTTCAGTCTATGCGGCCGAATCAT
CGAAGACCGGAGGACGACTCTGCGCAGCGACCACGTCGAAATGCTACTAAGCGTTAAAGACTGGGAGCTTGCTCGACAAC
ATGCCCAATACACTGCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20602.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis